CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: plastid, cytosol

Predictor Summary:

plastid 4
mitochondrion 1
cytosol 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol, plastid
Any Predictor:	cytosol, plastid
BaCelLo:	plastid
ChloroP:	plastid
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY11139	Canola	plastid	71.32	48.09
KRH09430	Soybean	cytosol	11.32	44.12
Solyc02g032250.1.1	Tomato	cytosol	11.32	42.25
CDX96441	Canola	cytosol	34.72	41.26
CDY67955	Canola	mitochondrion	65.66	40.37
CDY11140	Canola	mitochondrion	63.77	39.12
VIT_05s0051g00300.t01	Wine grape	plastid	15.85	37.84
CDY59925	Canola	cytosol	33.96	36.59
CDX72958	Canola	plastid	58.49	35.63
CDX72960	Canola	plastid	58.11	35.08
KRH09419	Soybean	cytosol, plasma membrane, plastid	9.81	33.77
CDY48026	Canola	mitochondrion	59.25	33.76
CDY48315	Canola	cytosol	47.55	32.64
CDX96439	Canola	mitochondrion, plastid	49.06	32.1
AT1G72890.2	Thale cress	mitochondrion, plastid	58.87	32.03
CDY26232	Canola	cytosol	46.42	31.87
CDX96440	Canola	cytosol	44.91	31.65
KRH53793	Soybean	cytosol	26.04	31.08
CDX72959	Canola	cytosol	43.77	30.45
CDX96438	Canola	cytosol	43.4	30.42
KRH08587	Soybean	cytosol	30.94	30.15
KRG89385	Soybean	cytosol	24.15	29.91
CDX72961	Canola	cytosol, plastid	43.77	20.21
CDX96437	Canola	golgi, mitochondrion	21.13	18.36
CDX68251	Canola	cytosol, plastid	66.79	14.87
KRH64151	Soybean	cytosol	25.66	14.66
CDY16898	Canola	plastid	17.74	8.55
CDX96442	Canola	cytosol	14.72	4.94

Protein Annotations

MapMan:26.8.2.1	Gene3D:3.40.50.10140	GO:A0A078FGG2	UniProt:A0A078FGG2	EnsemblPlants:CDY11138	ProteinID:CDY11138
ProteinID:CDY11138.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0007154	GO:GO:0007165
GO:GO:0008150	GO:GO:0009987	EnsemblPlantsGene:GSBRNA2T00049128001	InterPro:IPR000157	InterPro:IPR035897	PFAM:PF01582
PFscan:PS50104	PANTHER:PTHR43904	SMART:SM00255	SUPFAM:SSF52200	InterPro:TIR_dom	InterPro:Toll_tir_struct_dom_sf
UniParc:UPI0004EF2041	:	:	:	:	:

Description

BnaC06g23900DBnaC06g23900D protein [Source:UniProtKB/TrEMBL;Acc:A0A078FGG2]

Coordinates

chrLK032009:-:557411..558975

Molecular Weight (calculated)

30147.2 Da

IEP (calculated)

9.735

GRAVY (calculated)

-0.382

Length

265 amino acids

Sequence
(BLAST)

001: MSTMLEKVSC FKTKTKSKGP FESRSSLCSS TSPEKYEVFL SFRGADTRKN FVSFLYKELK AKGIRTFKDD KSLVCGRQIA PEILQAIKGT KIAVVVVSPT
101: YPASYWCLEE LVMTLKQEKE NVLTVVPIFY EVEPFDLKRQ TGKLVEQFKK HERRHSIERV NSWRDALTRL ATLSGDCSKS WENDATLVDR ITERVSEMLS
201: TVTLSNGVQV SGIWGRGNKG RSALARHVYQ NISTNFDAHS LKYVKALLSD GDQLMERFNE TIYSL

Best Arabidopsis Sequence Match ( AT1G17615.1 )
(BLAST)

001: MYSSSSSSSA TPQKFDVFLS FRGKDTRRTF ISFLYKELIE MGIRTFKDDV ELQSGRRIAS DLLAAIENSK IAVVIISKNY SASPWCLQEL VMIMDVEKKG
101: SIIVMPIFYN VEPAHVRRQI EQVAKQFRKH EGRENYETVV SWRQALTNLA SISGHCSRDC EDDSKLLDEI TKRISDMLFS VTPPSESINN QLGFDARMKE
201: LYPLLDLDSN EGVRVVGIWA RGGNGRSALA RYVYQKIFKK FQSHCFLENV KGIPHDCQMS NLRDEFLIRI QGGYSRMKTS GLIKKRLMSQ KVLLVANNVD
301: KLEQLDALAE YFNCFGPGSI VLITTQDKQL LVAFGIKVVY EVECLRCFEV RQLFRQIGFR ERDLNVGSEL SSPISGTESS

Arabidopsis Description

Disease resistance protein (TIR-NBS class) [Source:UniProtKB/TrEMBL;Acc:Q4PT31]
SUBAcon: [plastid,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.