Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 1
- mitochondrion 2
- cytosol 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| AT1G72920.1 | Thale cress | cytosol | 72.73 | 46.55 |
| CDX96441 | Canola | cytosol | 57.95 | 45.74 |
| CDY59925 | Canola | cytosol | 61.36 | 43.9 |
| AT1G72910.1 | Thale cress | cytosol | 91.48 | 42.37 |
| Solyc02g032250.1.1 | Tomato | cytosol | 17.05 | 42.25 |
| VIT_05s0051g00300.t01 | Wine grape | plastid | 24.43 | 38.74 |
| KRH09430 | Soybean | cytosol | 14.2 | 36.76 |
| AT1G72900.1 | Thale cress | cytosol | 75.0 | 36.36 |
| KRH09419 | Soybean | cytosol, plasma membrane, plastid | 15.34 | 35.06 |
| AT1G72940.1 | Thale cress | cytosol | 73.3 | 34.77 |
| AT1G72950.1 | Thale cress | cytosol | 69.32 | 32.19 |
| CDX96440 | Canola | cytosol | 66.48 | 31.12 |
| CDX72959 | Canola | cytosol | 63.64 | 29.4 |
| CDX96438 | Canola | cytosol | 63.07 | 29.37 |
| Bra016028.1-P | Field mustard | cytosol | 63.07 | 29.37 |
| KRH53793 | Soybean | cytosol | 36.93 | 29.28 |
| AT1G17615.1 | Thale cress | cytosol, plastid | 59.66 | 27.63 |
| KRH08587 | Soybean | cytosol | 42.61 | 27.57 |
| KRG89385 | Soybean | cytosol | 29.55 | 24.3 |
| AT1G72890.2 | Thale cress | mitochondrion, plastid | 56.25 | 20.33 |
| CDX72961 | Canola | cytosol, plastid | 63.07 | 19.34 |
| KRH64151 | Soybean | cytosol | 35.23 | 13.36 |
| Bra016026.1-P | Field mustard | cytosol | 65.34 | 10.08 |
Protein Annotations
| MapMan:26.8.2.1 | Gene3D:3.40.50.10140 | PDB:3JRN | EntrezGene:843624 | ProteinID:AAD55640.1 | ProteinID:AEE35392.1 |
| ProteinID:AEE35393.1 | EMBL:AF188334 | EMBL:AK317547 | EMBL:AK317731 | ArrayExpress:AT1G72930 | EnsemblPlantsGene:AT1G72930 |
| RefSeq:AT1G72930 | TAIR:AT1G72930 | RefSeq:AT1G72930-TAIR-G | EnsemblPlants:AT1G72930.1 | TAIR:AT1G72930.1 | EMBL:AY044312 |
| EMBL:AY065114 | EMBL:AY081663 | EMBL:AY086809 | Unigene:At.48366 | GO:GO:0003674 | GO:GO:0005488 |
| GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0006950 |
| GO:GO:0006952 | GO:GO:0007154 | GO:GO:0007165 | GO:GO:0008150 | GO:GO:0009506 | GO:GO:0009987 |
| InterPro:IPR000157 | InterPro:IPR035897 | RefSeq:NP_001077816.1 | RefSeq:NP_177436.1 | PFAM:PF01582 | PO:PO:0000293 |
| PFscan:PS50104 | PANTHER:PTHR11017 | UniProt:Q9SSN3 | SMART:SM00255 | SUPFAM:SSF52200 | Symbol:TIR |
| InterPro:TIR_dom | InterPro:Toll_tir_struct_dom_sf | UniParc:UPI00000A1B32 | : | : | : |
Description
TIRToll/interleukin-1 receptor-like protein [Source:UniProtKB/Swiss-Prot;Acc:Q9SSN3]
Coordinates
chr1:+:27439240..27440464
Molecular Weight (calculated)
20246.0 Da
IEP (calculated)
7.623
GRAVY (calculated)
-0.459
Length
176 amino acids
Sequence
(BLAST)
(BLAST)
001: MSSHTATKYD VFLSFRGHDT RHNFISFLYK ELVRRSIRTF KDDKELENGQ RFSPELKSPI EVSRFAVVVV SENYAASSWC LDELVTIMDF EKKGSITVMP
101: IFYGVEPNHV RWQTGVLAEQ FKKHASREDP EKVLKWRQAL TNFAQLSGDC SGDDDSKLVD KIANEISNKK TIYATI
101: IFYGVEPNHV RWQTGVLAEQ FKKHASREDP EKVLKWRQAL TNFAQLSGDC SGDDDSKLVD KIANEISNKK TIYATI
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.