Factsheet for VIT_14s0060g01540.t01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 5
cytosol 2
golgi 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
VIT_00s0252g00080.t01
VIT_00s0252g00100.t01
VIT_00s0317g00130.t01
VIT_01s0010g03370.t01
VIT_01s0010g03380.t01
VIT_01s0011g00680.t01
VIT_01s0026g02110.t01
VIT_01s0150g00030.t01
VIT_01s0150g00580.t01
VIT_02s0025g02140.t01
VIT_03s0063g00130.t01
VIT_04s0023g03210.t01
VIT_05s0020g02990.t01
VIT_05s0077g01840.t01
VIT_05s0136g00290.t01
VIT_06s0004g03410.t01
VIT_06s0004g04020.t01
VIT_06s0004g07150.t01
VIT_06s0004g07940.t01
VIT_06s0004g08260.t01
VIT_07s0005g00840.t01
VIT_07s0151g00900.t01
VIT_08s0007g08370.t01
VIT_08s0040g02420.t01
VIT_08s0058g00390.t01
VIT_10s0003g01520.t01
VIT_13s0019g03640.t01
VIT_13s0067g01820.t01
VIT_13s0067g02700.t01
VIT_14s0030g01620.t01
VIT_14s0108g00460.t01
VIT_14s0108g01200.t01
VIT_16s0098g01580.t01
VIT_17s0000g01520.t01
VIT_17s0000g05970.t01
VIT_17s0000g06980.t01
VIT_18s0001g05140.t01
VIT_18s0001g14500.t01
VIT_18s0001g14620.t01
VIT_18s0001g15600.t01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT5G26980.1	VIT_05s0077g01840.t01	AT1G02780.1	24556609
AT5G26980.1	VIT_07s0005g00840.t01	AT1G02780.1	24556609
AT5G26980.1	VIT_05s0136g00290.t01	AT1G04750.1	24556609
AT5G26980.1	VIT_01s0150g00580.t01	AT1G14320.1	24556609
AT5G26980.1	VIT_06s0004g08260.t01	AT1G14320.1	24556609
AT5G26980.1	VIT_01s0010g03370.t01	AT1G27400.1	24556609
AT5G26980.1	VIT_01s0010g03380.t01	AT1G27400.1	24556609
AT5G26980.1	VIT_17s0000g01520.t01	AT1G27400.1	24556609
AT5G26980.1	VIT_18s0001g05140.t01	AT1G27400.1	24556609
AT5G26980.1	VIT_08s0007g08370.t01	AT1G58380.1	24556609
AT5G26980.1	VIT_18s0001g15600.t01	AT1G77140.1	10888666
AT5G26980.1	VIT_18s0001g15600.t01	AT1G77140.1	24556609
AT5G26980.1	VIT_00s0252g00080.t01	AT2G17360.1	24556609
AT5G26980.1	VIT_00s0252g00100.t01	AT2G17360.1	24556609
AT5G26980.1	VIT_06s0004g07150.t01	AT2G17360.1	24556609
AT5G26980.1	VIT_08s0058g00390.t01	AT2G17360.1	24556609
AT5G26980.1	VIT_13s0067g01820.t01	AT2G17360.1	24556609
AT5G26980.1	VIT_04s0023g03210.t01	AT2G18020.1	24556609
AT5G26980.1	VIT_00s0317g00130.t01	AT2G39390.1	24556609
AT5G26980.1	VIT_06s0004g04020.t01	AT2G39390.1	24556609
AT5G26980.1	VIT_06s0004g07940.t01	AT2G40510.1	24556609
AT5G26980.1	VIT_13s0067g02700.t01	AT2G40510.1	24556609
AT5G26980.1	VIT_10s0003g01520.t01	AT2G42740.1	24556609
AT5G26980.1	VIT_01s0011g00680.t01	AT3G02080.1	24556609
AT5G26980.1	VIT_17s0000g06980.t01	AT3G02080.1	24556609
AT5G26980.1	VIT_03s0063g00130.t01	AT3G04230.1	24556609
AT5G26980.1	VIT_05s0020g02990.t01	AT3G04230.1	24556609
AT5G26980.1	VIT_18s0001g14620.t01	AT3G04230.1	24556609
AT5G26980.1	VIT_07s0151g00900.t01	AT3G04920.1	24556609
AT5G26980.1	VIT_14s0030g01620.t01	AT3G04920.1	24556609
AT5G26980.1	VIT_18s0001g14500.t01	AT4G24190.1	24556609
AT5G26980.1	VIT_06s0004g03410.t01	AT5G02960.1	24556609
AT5G26980.1	VIT_08s0040g02420.t01	AT5G02960.1	24556609
AT5G26980.1	VIT_13s0019g03640.t01	AT5G02960.1	24556609
AT5G26980.1	VIT_01s0150g00030.t01	AT5G13300.1	15743878
AT5G26980.1	VIT_01s0026g02110.t01	AT5G15200.1	24556609
AT5G26980.1	VIT_14s0108g00460.t01	AT5G15200.1	24556609
AT5G26980.1	VIT_17s0000g05970.t01	AT5G15200.1	24556609
AT5G26980.1	VIT_02s0025g02140.t01	AT5G28540.1	24556609
AT5G26980.1	VIT_16s0098g01580.t01	AT5G28540.1	24556609
AT5G26980.1	VIT_14s0108g01200.t01	AT5G39510.1	10888666
AT5G26980.1	VIT_01s0011g00680.t01	AT5G61170.1	24556609
AT5G26980.1	VIT_17s0000g06980.t01	AT5G61170.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG92945	Soybean	mitochondrion	81.35	81.6
VIT_07s0005g01000.t01	Wine grape	mitochondrion	78.59	80.82
KRH33850	Soybean	endoplasmic reticulum	79.82	80.06
Solyc01g100170.2.1	Tomato	mitochondrion	79.2	79.94
Zm00001d039404_P001	Maize	plasma membrane	78.9	79.88
OQU86127	Sorghum	mitochondrion	79.51	79.75
Zm00001d013996_P003	Maize	mitochondrion	77.98	79.69
TraesCS7D01G044300.1	Wheat	cytosol	57.8	79.41
GSMUA_Achr11P...	Banana	mitochondrion	78.29	78.77
GSMUA_Achr10P...	Banana	mitochondrion	79.2	78.48
Os06t0116300-01	Rice	plasma membrane	78.59	77.88
Bra040527.1-P	Field mustard	mitochondrion	75.54	77.67
CDY18808	Canola	mitochondrion	75.23	77.36
AT5G26980.1	Thale cress	mitochondrion	76.15	77.33
TraesCS7A01G049200.1	Wheat	mitochondrion	77.37	77.13
CDY05193	Canola	mitochondrion	74.62	76.97
GSMUA_Achr4P18460_001	Banana	mitochondrion	78.59	76.72
CDY27747	Canola	mitochondrion	74.01	76.34
Bra039417.1-P	Field mustard	mitochondrion	74.01	76.34
AT3G05710.2	Thale cress	mitochondrion	76.45	75.53
PGSC0003DMT400063615	Potato	mitochondrion	80.12	71.39
EER87742	Sorghum	mitochondrion	51.07	70.17
HORVU7Hr1G008670.5	Barley	mitochondrion	75.84	68.51
TraesCS4A01G435000.1	Wheat	mitochondrion	68.2	67.99
Zm00001d045530_P001	Maize	cytosol	18.35	66.67
HORVU7Hr1G008640.2	Barley	mitochondrion	47.4	59.62

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	EntrezGene:100259549	wikigene:100259549	MapMan:22.7.1.4	ProteinID:CBI39564
ProteinID:CBI39564.3	UniProt:D7UA00	EMBL:FN596746	GO:GO:0000149	GO:GO:0003674	GO:GO:0005484
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0006810	GO:GO:0006886	GO:GO:0006906	GO:GO:0008150	GO:GO:0009987	GO:GO:0012505
GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0031201	GO:GO:0048278
InterPro:IPR000727	EntrezGene:LOC100259549	wikigene:LOC100259549	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192
PANTHER:PTHR19957	PANTHER:PTHR19957:SF83	SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661
InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TIGR:TC52593	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI00015CA20A
ArrayExpress:VIT_14s0060g01540	EnsemblPlantsGene:VIT_14s0060g01540	EnsemblPlants:VIT_14s0060g01540.t01	unigene:Vvi.7247	RefSeq:XP_002282882	RefSeq:XP_002282882.2
SEG:seg	:	:	:	:	:

Description

No Description!

Coordinates

chr14:-:1219883..1226909

Molecular Weight (calculated)

36414.8 Da

IEP (calculated)

9.288

GRAVY (calculated)

-0.445

Length

327 amino acids

Sequence
(BLAST)

001: MASRNRTLLY RKYRDALKSV RVPVSSSLSS STPSTSSGGG PVIELVSTSL LNPNRSYVPL STEDPGNSSK GALTVGLPPA WVDVSEEISA NVQRARTKMA
101: ELVKAHAKAL MPSFGDGKED QHRIESLTQE ITDLLKKSEK RLQKLSSTGP SEDSNVRKNV QRSLATDLQN LSMELRKKQS SYLKRLRQQK EGQDGVDLEM
201: NLNGNKSLRE DDEFSDLGFN EHQMTKLKKN EAFTAERERE IQQVVESVNE LAQIMKDLSV LVIDQGTIVD RIDYNIQNVA ASVEEGFKQL QKAERTQKKG
301: GMVMCATVLV IMCFVMLVLL ILKTILL

Best Arabidopsis Sequence Match ( AT3G05710.2 )
(BLAST)

001: MATRNRTLLF RKYRNSLRSV RAPMGSSSSS TLTEHNSLTG AKSGLGPVIE MASTSLLNPN RSYAPVSTED PGNSSRGTIT VGLPPDWVDV SEEISVYIQR
101: ARTKMAELGK AHAKALMPSF GDGKEDQHQI ETLTQEVTFL LKKSEKQLQR LSAAGPSEDS NVRKNVQRSL ATDLQNLSME LRKKQSTYLK RLRLQKEDGA
201: DLEMNLNGSR YKAEDDDFDD MVFSEHQMSK IKKSEEISIE REKEIQQVVE SVSELAQIMK DLSALVIDQG TIVDRIDYNI QNVASTVDDG LKQLQKAERT
301: QRQGGMVMCA SVLVILCFIM LVLLILKEIL L

Arabidopsis Description

SYP43Syntaxin-43 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUJ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.