CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
EER88512
EER89359
EER90536
EER90537
EER90550
EER90632
EER90966
EER93242
EER93243
EER93866
EER96052
EER96269
EER99172
EER99434
EER99750
EES00248
EES00250
EES00734
EES03157
EES03542
EES03842
EES04817
EES04818
EES05110
EES05112
EES05488
EES06302
EES06539
EES06560
EES09085
EES09177
EES12457
EES12723
EES12864
EES13788
EES14121
EES15592
EES15996
EES17871
EES18108
EES18362
EES18535
EES19208
EES19663
EES19692
KXG20149
KXG20895
KXG22766
KXG23748
KXG25953
KXG27825
KXG29291
KXG29884
KXG31594
KXG32490
KXG39115
OQU76471
OQU78327
OQU80812
OQU80827
OQU85305
OQU90309
OQU90562
OQU90753
OQU92521

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G02195.1	EER89359	AT1G02780.1	24556609
AT4G02195.1	EES03157	AT1G02780.1	24556609
AT4G02195.1	EES06302	AT1G02780.1	24556609
AT4G02195.1	EES18362	AT1G07820.1	24556609
AT4G02195.1	EES09085	AT1G25260.1	24556609
AT4G02195.1	KXG22766	AT1G25260.1	24556609
AT4G02195.1	EER90536	AT1G27400.1	24556609
AT4G02195.1	EER90537	AT1G27400.1	24556609
AT4G02195.1	EES19208	AT1G27400.1	24556609
AT4G02195.1	OQU80827	AT1G27400.1	24556609
AT4G02195.1	EES12864	AT1G43170.1	24556609
AT4G02195.1	KXG27825	AT1G43170.1	24556609
AT4G02195.1	EES13788	AT1G77140.1	10888666
AT4G02195.1	EES13788	AT1G77140.1	24556609
AT4G02195.1	EER96269	AT2G18020.1	24556609
AT4G02195.1	EES18535	AT2G18020.1	24556609
AT4G02195.1	KXG23748	AT2G18020.1	24556609
AT4G02195.1	OQU78327	AT2G18020.1	24556609
AT4G02195.1	EES00248	AT2G42740.1	24556609
AT4G02195.1	EES04817	AT2G42740.1	24556609
AT4G02195.1	EES04818	AT2G42740.1	24556609
AT4G02195.1	EES17871	AT2G42740.1	24556609
AT4G02195.1	KXG20149	AT2G42740.1	24556609
AT4G02195.1	KXG29884	AT2G42740.1	24556609
AT4G02195.1	KXG31594	AT2G42740.1	24556609
AT4G02195.1	EER88512	AT3G04920.1	24556609
AT4G02195.1	EES03542	AT3G04920.1	24556609
AT4G02195.1	EES06539	AT3G04920.1	24556609
AT4G02195.1	EER90966	AT3G12030.1	24556609
AT4G02195.1	KXG25953	AT3G12030.1	24556609
AT4G02195.1	EES00250	AT3G46320.1	24556609
AT4G02195.1	EES12457	AT3G48930.1	24556609
AT4G02195.1	OQU85305	AT3G48930.1	24556609
AT4G02195.1	EES12723	AT3G53730.1	24556609
AT4G02195.1	EER99434	AT4G18060.1	24556609
AT4G02195.1	KXG20895	AT4G24190.1	24556609
AT4G02195.1	EES05488	AT4G28250.1	24556609
AT4G02195.1	EES00250	AT5G59970.1	24556609
AT5G26980.1	EER89359	AT1G02780.1	24556609
AT5G26980.1	EES03157	AT1G02780.1	24556609
AT5G26980.1	EES06302	AT1G02780.1	24556609
AT5G26980.1	EER93866	AT1G14320.1	24556609
AT5G26980.1	EES06560	AT1G14320.1	24556609
AT5G26980.1	EER90536	AT1G27400.1	24556609
AT5G26980.1	EER90537	AT1G27400.1	24556609
AT5G26980.1	EES19208	AT1G27400.1	24556609
AT5G26980.1	OQU80827	AT1G27400.1	24556609
AT5G26980.1	EES12864	AT1G43170.1	24556609
AT5G26980.1	KXG27825	AT1G43170.1	24556609
AT5G26980.1	EER93242	AT1G58380.1	24556609
AT5G26980.1	EER93243	AT1G58380.1	24556609
AT5G26980.1	EER96052	AT1G58380.1	24556609
AT5G26980.1	OQU76471	AT1G58380.1	24556609
AT5G26980.1	OQU90562	AT1G58380.1	24556609
AT5G26980.1	EES13788	AT1G77140.1	10888666
AT5G26980.1	EES13788	AT1G77140.1	24556609
AT5G26980.1	EER90550	AT2G17360.1	24556609
AT5G26980.1	EES00734	AT2G17360.1	24556609
AT5G26980.1	EES18108	AT2G17360.1	24556609
AT5G26980.1	KXG32490	AT2G17360.1	24556609
AT5G26980.1	EER96269	AT2G18020.1	24556609
AT5G26980.1	EES18535	AT2G18020.1	24556609
AT5G26980.1	KXG23748	AT2G18020.1	24556609
AT5G26980.1	OQU78327	AT2G18020.1	24556609
AT5G26980.1	EES05110	AT2G39390.1	24556609
AT5G26980.1	EES05112	AT2G39390.1	24556609
AT5G26980.1	EES19692	AT2G40510.1	24556609
AT5G26980.1	OQU90753	AT2G40510.1	24556609
AT5G26980.1	EES00248	AT2G42740.1	24556609
AT5G26980.1	EES04817	AT2G42740.1	24556609
AT5G26980.1	EES04818	AT2G42740.1	24556609
AT5G26980.1	EES17871	AT2G42740.1	24556609
AT5G26980.1	KXG20149	AT2G42740.1	24556609
AT5G26980.1	KXG29884	AT2G42740.1	24556609
AT5G26980.1	KXG31594	AT2G42740.1	24556609
AT5G26980.1	EES14121	AT3G02080.1	24556609
AT5G26980.1	KXG39115	AT3G02080.1	24556609
AT5G26980.1	EES09177	AT3G04230.1	24556609
AT5G26980.1	EES15592	AT3G04230.1	24556609
AT5G26980.1	EER88512	AT3G04920.1	24556609
AT5G26980.1	EES03542	AT3G04920.1	24556609
AT5G26980.1	EES06539	AT3G04920.1	24556609
AT5G26980.1	KXG20895	AT4G24190.1	24556609
AT5G26980.1	EER90632	AT5G02960.1	24556609
AT5G26980.1	EES03842	AT5G02960.1	24556609
AT5G26980.1	EES19663	AT5G02960.1	24556609
AT5G26980.1	EER99172	AT5G13300.1	15743878
AT5G26980.1	OQU80812	AT5G13300.1	15743878
AT5G26980.1	EER99750	AT5G15200.1	24556609
AT5G26980.1	EES15996	AT5G15200.1	24556609
AT5G26980.1	OQU90309	AT5G15200.1	24556609
AT5G26980.1	OQU92521	AT5G15200.1	24556609
AT5G26980.1	KXG29291	AT5G28540.1	24556609
AT5G26980.1	EES14121	AT5G61170.1	24556609
AT5G26980.1	KXG39115	AT5G61170.1	24556609

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
OQU86127	Sorghum	mitochondrion	85.71	62.58
HORVU7Hr1G008640.2	Barley	mitochondrion	68.07	62.31
Zm00001d013996_P003	Maize	mitochondrion	83.61	62.19
CDX97432	Canola	extracellular, vacuole	6.72	61.54
Os06t0116300-01	Rice	plasma membrane	83.61	60.3
TraesCS7D01G044300.1	Wheat	cytosol	57.98	57.98
TraesCS7A01G049200.1	Wheat	mitochondrion	79.83	57.93
HORVU7Hr1G008670.5	Barley	mitochondrion	79.41	52.21
GSMUA_Achr10P...	Banana	mitochondrion	71.01	51.21
VIT_14s0060g01540.t01	Wine grape	mitochondrion	70.17	51.07
GSMUA_Achr11P...	Banana	mitochondrion	69.33	50.77
TraesCS4A01G435000.1	Wheat	mitochondrion	66.39	48.17
VIT_07s0005g01000.t01	Wine grape	mitochondrion	63.87	47.8
KRH33850	Soybean	endoplasmic reticulum	65.13	47.55
KRG92945	Soybean	mitochondrion	64.29	46.93
Solyc01g100170.2.1	Tomato	mitochondrion	63.87	46.91
KRH68233	Soybean	plastid	63.03	46.88
CDY18808	Canola	mitochondrion	62.6	46.86
Bra040527.1-P	Field mustard	mitochondrion	62.6	46.86
CDY05193	Canola	mitochondrion	61.76	46.37
CDY27747	Canola	mitochondrion	61.34	46.06
Bra039417.1-P	Field mustard	mitochondrion	61.34	46.06
KRG96492	Soybean	plastid	61.34	45.06
AT3G05710.2	Thale cress	mitochondrion	61.76	44.41
CDY22037	Canola	mitochondrion	60.08	44.41
CDY52786	Canola	mitochondrion	60.08	44.41
AT5G26980.1	Thale cress	mitochondrion	59.24	43.79
AT4G02195.1	Thale cress	cytosol, mitochondrion, plastid	58.82	43.34
Solyc09g075530.2.1	Tomato	cytosol, mitochondrion	57.14	42.63
Bra036287.1-P	Field mustard	cytosol, mitochondrion	50.42	41.67
PGSC0003DMT400063615	Potato	mitochondrion	63.87	41.42
PGSC0003DMT400081334	Potato	mitochondrion	49.58	36.88

Protein Annotations

Gene3D:1.20.5.110	MapMan:22.7.1.4	UniProt:C5Z2V2	EnsemblPlants:EER87742	ProteinID:EER87742	ProteinID:EER87742.2
GO:GO:0003674	GO:GO:0005488	GO:GO:0005575	GO:GO:0006810	GO:GO:0008150	GO:GO:0008289
GO:GO:0016020	GO:GO:0016021	GO:GO:0016192	InterPro:IPR000727	PFAM:PF05739	PFscan:PS50192
PANTHER:PTHR19957	PANTHER:PTHR19957:SF83	SMART:SM00397	InterPro:SNARE	EnsemblPlantsGene:SORBI_3010G013600	SUPFAM:SSF47661
unigene:Sbi.20155	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0007F2C842	SEG:seg	:

Description

hypothetical protein

Coordinates

chr10:-:1138413..1142125

Molecular Weight (calculated)

27040.7 Da

IEP (calculated)

7.906

GRAVY (calculated)

-0.402

Length

238 amino acids

Sequence
(BLAST)

001: MATRNRTPLY RKYRDALRHV RAPAGEPSPS GGGRGVPVVE MASLLRSDRP YAPLSTDDPS DCRCHHHIRL QHPCLISSDL QNLSMEFRKK QSSYLNHLRQ
101: QKEGQDGVDL EMNINGTKST FEDDEFEDVG FTRVQMSKLK KSQAFTRERE REIEQVVESV NELAQIMKDP SVLVIDQGTI IDRIDCNIQN VAASVEEGYK
201: QLQKAERTQK KGGVVMCATV LVILIFIMIV LLILRIIF

Best Arabidopsis Sequence Match ( AT3G05710.2 )
(BLAST)

001: MATRNRTLLF RKYRNSLRSV RAPMGSSSSS TLTEHNSLTG AKSGLGPVIE MASTSLLNPN RSYAPVSTED PGNSSRGTIT VGLPPDWVDV SEEISVYIQR
101: ARTKMAELGK AHAKALMPSF GDGKEDQHQI ETLTQEVTFL LKKSEKQLQR LSAAGPSEDS NVRKNVQRSL ATDLQNLSME LRKKQSTYLK RLRLQKEDGA
201: DLEMNLNGSR YKAEDDDFDD MVFSEHQMSK IKKSEEISIE REKEIQQVVE SVSELAQIMK DLSALVIDQG TIVDRIDYNI QNVASTVDDG LKQLQKAERT
301: QRQGGMVMCA SVLVILCFIM LVLLILKEIL L

Arabidopsis Description

SYP43Syntaxin-43 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUJ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.