CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra040527.1-P	Field mustard	mitochondrion	99.69	99.69
CDY05193	Canola	mitochondrion	92.45	92.74
CDY27747	Canola	mitochondrion	91.82	92.11
AT3G05710.2	Thale cress	mitochondrion	87.74	84.29
KRG92945	Soybean	mitochondrion	77.36	75.46
VIT_14s0060g01540.t01	Wine grape	mitochondrion	77.36	75.23
Solyc01g100170.2.1	Tomato	mitochondrion	76.1	74.69
KRH33850	Soybean	endoplasmic reticulum	75.47	73.62
TraesCS7D01G044300.1	Wheat	cytosol	54.4	72.69
Zm00001d013996_P003	Maize	mitochondrion	72.96	72.5
Zm00001d039404_P001	Maize	plasma membrane	73.58	72.45
OQU86127	Sorghum	mitochondrion	74.21	72.39
TraesCS7A01G049200.1	Wheat	mitochondrion	72.96	70.73
Os06t0116300-01	Rice	plasma membrane	72.96	70.3
GSMUA_Achr11P...	Banana	mitochondrion	71.07	69.54
GSMUA_Achr4P18460_001	Banana	mitochondrion	72.64	68.96
GSMUA_Achr10P...	Banana	mitochondrion	70.44	67.88
PGSC0003DMT400063615	Potato	mitochondrion	77.04	66.76
CDX97432	Canola	extracellular, vacuole	5.35	65.38
CDY22037	Canola	mitochondrion	66.04	65.22
CDY52786	Canola	mitochondrion	64.47	63.66
HORVU7Hr1G008670.5	Barley	mitochondrion	72.33	63.54
TraesCS4A01G435000.1	Wheat	mitochondrion	64.78	62.8
EER87742	Sorghum	mitochondrion	46.86	62.6
Zm00001d045530_P001	Maize	cytosol	16.98	60.0
HORVU7Hr1G008640.2	Barley	mitochondrion	45.91	56.15

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.4	GO:A0A078G2C1	UniProt:A0A078G2C1	EnsemblPlants:CDY18808
ProteinID:CDY18808	ProteinID:CDY18808.1	ncoils:Coil	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886
GO:GO:0008150	GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192
GO:GO:0061025	EnsemblPlantsGene:GSBRNA2T00005975001	InterPro:IPR000727	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192
PANTHER:PTHR19957	PANTHER:PTHR19957:SF83	SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661
InterPro:Syntaxin/epimorphin_CS	InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI0004EE1E86	:

Description

BnaAnng02730DBnaAnng02730D protein [Source:UniProtKB/TrEMBL;Acc:A0A078G2C1]

Coordinates

chrLK032089:-:279554..282049

Molecular Weight (calculated)

35442.7 Da

IEP (calculated)

7.574

GRAVY (calculated)

-0.372

Length

318 amino acids

Sequence
(BLAST)

001: MATRNRTLLF RKYRNSLRSV RAPMTEAKSG VGPVIEMASA TLLHPKRSYA PVSTEDPGSS SRGGAITVGL PPDWVDVSEE ISGNIQRARS KMAELGKAHA
101: KALMPTFGDG KEDQHQIESL TQEITFLLRK SEKQLQKLSA AGPSEDSNVR KNVQRSLATD LQFLSMELRK KQSTYLKRLR LQKEDGGDLE MNLNGSSSRA
201: EDDDFDDILF SEHQMSKIKK SEAISVEREK EIQQVVESVN ELAQIMKDLS ALVIDQGTIV DRIDYNIQNV ASTVEDGLKQ LQKAERTQRS GGMVMCASVL
301: VILCFIMIVL LILKEIFL

Best Arabidopsis Sequence Match ( AT3G05710.2 )
(BLAST)

001: MATRNRTLLF RKYRNSLRSV RAPMGSSSSS TLTEHNSLTG AKSGLGPVIE MASTSLLNPN RSYAPVSTED PGNSSRGTIT VGLPPDWVDV SEEISVYIQR
101: ARTKMAELGK AHAKALMPSF GDGKEDQHQI ETLTQEVTFL LKKSEKQLQR LSAAGPSEDS NVRKNVQRSL ATDLQNLSME LRKKQSTYLK RLRLQKEDGA
201: DLEMNLNGSR YKAEDDDFDD MVFSEHQMSK IKKSEEISIE REKEIQQVVE SVSELAQIMK DLSALVIDQG TIVDRIDYNI QNVASTVDDG LKQLQKAERT
301: QRQGGMVMCA SVLVILCFIM LVLLILKEIL L

Arabidopsis Description

SYP43Syntaxin-43 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUJ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.