CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 2
nucleus 1
mitochondrion 5
golgi 1
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra039417.1-P	Field mustard	mitochondrion	100.0	100.0
CDY05193	Canola	mitochondrion	98.74	98.74
CDY18808	Canola	mitochondrion	92.11	91.82
AT3G05710.2	Thale cress	mitochondrion	88.96	85.2
Solyc01g100170.2.1	Tomato	mitochondrion	76.03	74.38
VIT_14s0060g01540.t01	Wine grape	mitochondrion	76.34	74.01
KRG92945	Soybean	mitochondrion	75.71	73.62
KRH33850	Soybean	endoplasmic reticulum	74.45	72.39
OQU86127	Sorghum	mitochondrion	74.13	72.09
Zm00001d039404_P001	Maize	plasma membrane	73.19	71.83
Zm00001d013996_P003	Maize	mitochondrion	72.24	71.56
TraesCS7D01G044300.1	Wheat	cytosol	52.68	70.17
Os06t0116300-01	Rice	plasma membrane	72.87	70.0
CDX97432	Canola	extracellular, vacuole	5.68	69.23
GSMUA_Achr11P...	Banana	mitochondrion	70.35	68.62
TraesCS7A01G049200.1	Wheat	mitochondrion	70.98	68.6
GSMUA_Achr10P...	Banana	mitochondrion	69.72	66.97
GSMUA_Achr4P18460_001	Banana	mitochondrion	70.66	66.87
PGSC0003DMT400063615	Potato	mitochondrion	76.97	66.48
CDY22037	Canola	mitochondrion	65.62	64.6
CDY52786	Canola	mitochondrion	64.04	63.04
HORVU7Hr1G008670.5	Barley	mitochondrion	70.66	61.88
EER87742	Sorghum	mitochondrion	46.06	61.34
TraesCS4A01G435000.1	Wheat	mitochondrion	63.41	61.28
Zm00001d045530_P001	Maize	cytosol	16.09	56.67
HORVU7Hr1G008640.2	Barley	mitochondrion	44.8	54.62

Protein Annotations

Gene3D:1.20.5.110	Gene3D:1.20.58.70	MapMan:22.7.1.4	GO:A0A078GRF5	UniProt:A0A078GRF5	EnsemblPlants:CDY27747
ProteinID:CDY27747	ProteinID:CDY27747.1	GO:GO:0003674	GO:GO:0005484	GO:GO:0005488	GO:GO:0005515
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0006810	GO:GO:0006886	GO:GO:0008150
GO:GO:0009987	GO:GO:0016020	GO:GO:0016021	GO:GO:0016043	GO:GO:0016192	GO:GO:0061025
EnsemblPlantsGene:GSBRNA2T00038549001	InterPro:IPR000727	PFAM:PF05739	ScanProsite:PS00914	PFscan:PS50192	PANTHER:PTHR19957
PANTHER:PTHR19957:SF83	SMART:SM00397	SMART:SM00503	InterPro:SNARE	SUPFAM:SSF47661	InterPro:Syntaxin/epimorphin_CS
InterPro:Syntaxin_N	TMHMM:TMhelix	InterPro:T_SNARE_dom	UniParc:UPI00025481A0	:	:

Description

BnaA05g31560DBnaA05g31560D protein [Source:UniProtKB/TrEMBL;Acc:A0A078GRF5]

Coordinates

chrLK032209:-:228881..230899

Molecular Weight (calculated)

35485.7 Da

IEP (calculated)

8.656

GRAVY (calculated)

-0.446

Length

317 amino acids

Sequence
(BLAST)

001: MATRNRTLLF RKYRNSLRSV RAPMTESKSG VGPVIEMAST SLLHPKRSYT PVSTEDPGTS SKGAVTVGLP PDWVDVSEEI SVNIQRARTK MAELGKAHAK
101: ALMPSFGDGK EDQHQIESLT QAVTFLLRKS EKQLQRLSKG GPSEDSSVRK NVQRSLATDL QQLSMELRKK QSTYLKRLRL QKEDGGDLEM NLNGSSSRAE
201: DDDFDDILFS EHQMSKIKKS EEISVEREKE IQQVVESVNE LAQIMKDLSA LVIDQGTIVD RIDYNIQNVS STVEDGLKQL QKAERTQRSG GMVKCASVLV
301: ILCFIMLVLL ILKEIIF

Best Arabidopsis Sequence Match ( AT3G05710.2 )
(BLAST)

001: MATRNRTLLF RKYRNSLRSV RAPMGSSSSS TLTEHNSLTG AKSGLGPVIE MASTSLLNPN RSYAPVSTED PGNSSRGTIT VGLPPDWVDV SEEISVYIQR
101: ARTKMAELGK AHAKALMPSF GDGKEDQHQI ETLTQEVTFL LKKSEKQLQR LSAAGPSEDS NVRKNVQRSL ATDLQNLSME LRKKQSTYLK RLRLQKEDGA
201: DLEMNLNGSR YKAEDDDFDD MVFSEHQMSK IKKSEEISIE REKEIQQVVE SVSELAQIMK DLSALVIDQG TIVDRIDYNI QNVASTVDDG LKQLQKAERT
301: QRQGGMVMCA SVLVILCFIM LVLLILKEIL L

Arabidopsis Description

SYP43Syntaxin-43 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUJ1]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.