Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- plastid 1
- nucleus 1
- mitochondrion 6
- cytosol 1
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_Achr10P... | Banana | mitochondrion | 90.15 | 88.79 |
| Zm00001d013996_P003 | Maize | mitochondrion | 77.23 | 78.44 |
| Zm00001d039404_P001 | Maize | plasma membrane | 77.85 | 78.33 |
| VIT_14s0060g01540.t01 | Wine grape | mitochondrion | 78.77 | 78.29 |
| OQU86127 | Sorghum | mitochondrion | 78.46 | 78.22 |
| TraesCS7D01G044300.1 | Wheat | cytosol | 57.23 | 78.15 |
| TraesCS7A01G049200.1 | Wheat | mitochondrion | 77.23 | 76.52 |
| Os06t0116300-01 | Rice | plasma membrane | 77.23 | 76.06 |
| GSMUA_Achr4P18460_001 | Banana | mitochondrion | 76.31 | 74.03 |
| VIT_07s0005g01000.t01 | Wine grape | mitochondrion | 71.38 | 72.96 |
| Solyc01g100170.2.1 | Tomato | mitochondrion | 72.62 | 72.84 |
| KRG92945 | Soybean | mitochondrion | 72.62 | 72.39 |
| Bra040527.1-P | Field mustard | mitochondrion | 69.85 | 71.38 |
| CDY18808 | Canola | mitochondrion | 69.54 | 71.07 |
| KRH33850 | Soybean | endoplasmic reticulum | 71.08 | 70.86 |
| CDY05193 | Canola | mitochondrion | 68.92 | 70.66 |
| AT5G26980.1 | Thale cress | mitochondrion | 69.85 | 70.5 |
| CDY27747 | Canola | mitochondrion | 68.62 | 70.35 |
| Bra039417.1-P | Field mustard | mitochondrion | 68.62 | 70.35 |
| Zm00001d045530_P001 | Maize | cytosol | 19.38 | 70.0 |
| EER87742 | Sorghum | mitochondrion | 50.77 | 69.33 |
| CDX97432 | Canola | extracellular, vacuole | 5.54 | 69.23 |
| AT3G05710.2 | Thale cress | mitochondrion | 70.15 | 68.88 |
| KRG96492 | Soybean | plastid | 68.62 | 68.83 |
| HORVU7Hr1G008670.5 | Barley | mitochondrion | 76.31 | 68.51 |
| KRH68233 | Soybean | plastid | 67.38 | 68.44 |
| TraesCS4A01G435000.1 | Wheat | mitochondrion | 68.31 | 67.68 |
| CDY22037 | Canola | mitochondrion | 65.85 | 66.46 |
| CDY52786 | Canola | mitochondrion | 64.92 | 65.53 |
| AT4G02195.1 | Thale cress | cytosol, mitochondrion, plastid | 64.92 | 65.33 |
| PGSC0003DMT400063615 | Potato | mitochondrion | 73.54 | 65.12 |
| Bra036287.1-P | Field mustard | cytosol, mitochondrion | 57.23 | 64.58 |
| Solyc09g075530.2.1 | Tomato | cytosol, mitochondrion | 62.15 | 63.32 |
| HORVU7Hr1G008640.2 | Barley | mitochondrion | 46.46 | 58.08 |
| PGSC0003DMT400081334 | Potato | mitochondrion | 55.38 | 56.25 |
Protein Annotations
| Gene3D:1.20.5.110 | Gene3D:1.20.58.70 | MapMan:22.7.1.4 | ncoils:Coil | GO:GO:0003674 | GO:GO:0005484 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0006810 |
| GO:GO:0006886 | GO:GO:0008150 | GO:GO:0009987 | GO:GO:0016020 | GO:GO:0016021 | GO:GO:0016043 |
| GO:GO:0016192 | GO:GO:0061025 | EnsemblPlantsGene:GSMUA_Achr11G07960_001 | EnsemblPlants:GSMUA_Achr11P07960_001 | EnsemblPlants:GSMUA_Achr11T07960_001 | InterPro:IPR000727 |
| UniProt:M0RQC6 | PFAM:PF05739 | ScanProsite:PS00914 | PFscan:PS50192 | PANTHER:PTHR19957 | PANTHER:PTHR19957:SF83 |
| SMART:SM00397 | SMART:SM00503 | InterPro:SNARE | SUPFAM:SSF47661 | InterPro:Syntaxin/epimorphin_CS | InterPro:Syntaxin_N |
| TMHMM:TMhelix | InterPro:T_SNARE_dom | UniParc:UPI0002967E3C | SEG:seg | : | : |
Description
Syntaxin-43 [Source:GMGC_GENE;Acc:GSMUA_Achr11G07960_001]
Coordinates
chr11:-:6191030..6195596
Molecular Weight (calculated)
36534.8 Da
IEP (calculated)
7.200
GRAVY (calculated)
-0.462
Length
325 amino acids
Sequence
(BLAST)
(BLAST)
001: MATRNRTPIY RKYRDALRNV RVPSPSSHSG PSTSYSGGGP VIELVSASLH RPDRSYAPLS TEDPGGSSTG ATMVGLPPAW VDVSEEIAAN MQCARTKMSE
101: LVKAHAKSLM PSFGDGKEDQ HVIELLTHEI TDLLKRSEKR LQKLSSGDPT EDSNVRKNVQ RSLATDLQNL SMEFRKKQSF YLKRLRQQQE GQDGVDLEMN
201: RNGIRHEMED DFHNVGFDEV QLSTLKRSEA FTREREREIV QVVESVNELA QIMKDLSVLV IDQGTIVDRI DYNVQNVASS VEEGRKQLEK AERTQRKGGM
301: VMCATVLVIL CFIMLVLLVL KTILF
101: LVKAHAKSLM PSFGDGKEDQ HVIELLTHEI TDLLKRSEKR LQKLSSGDPT EDSNVRKNVQ RSLATDLQNL SMEFRKKQSF YLKRLRQQQE GQDGVDLEMN
201: RNGIRHEMED DFHNVGFDEV QLSTLKRSEA FTREREREIV QVVESVNELA QIMKDLSVLV IDQGTIVDRI DYNVQNVASS VEEGRKQLEK AERTQRKGGM
301: VMCATVLVIL CFIMLVLLVL KTILF
001: MATRNRTLLF RKYRNSLRSV RAPMGSSSSS TLTEHNSLTG AKSGLGPVIE MASTSLLNPN RSYAPVSTED PGNSSRGTIT VGLPPDWVDV SEEISVYIQR
101: ARTKMAELGK AHAKALMPSF GDGKEDQHQI ETLTQEVTFL LKKSEKQLQR LSAAGPSEDS NVRKNVQRSL ATDLQNLSME LRKKQSTYLK RLRLQKEDGA
201: DLEMNLNGSR YKAEDDDFDD MVFSEHQMSK IKKSEEISIE REKEIQQVVE SVSELAQIMK DLSALVIDQG TIVDRIDYNI QNVASTVDDG LKQLQKAERT
301: QRQGGMVMCA SVLVILCFIM LVLLILKEIL L
101: ARTKMAELGK AHAKALMPSF GDGKEDQHQI ETLTQEVTFL LKKSEKQLQR LSAAGPSEDS NVRKNVQRSL ATDLQNLSME LRKKQSTYLK RLRLQKEDGA
201: DLEMNLNGSR YKAEDDDFDD MVFSEHQMSK IKKSEEISIE REKEIQQVVE SVSELAQIMK DLSALVIDQG TIVDRIDYNI QNVASTVDDG LKQLQKAERT
301: QRQGGMVMCA SVLVILCFIM LVLLILKEIL L
Arabidopsis Description
SYP43Syntaxin-43 [Source:UniProtKB/Swiss-Prot;Acc:Q9SUJ1]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.