Factsheet for GSMUA_AchrUn_randomP18970_001

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

nucleus 2
cytosol 3
mitochondrion 4
endoplasmic reticulum 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
GSMUA_Achr11P...

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26910.1	GSMUA_Achr11P...	AT1G71840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_Achr6P15860_001	Banana	mitochondrion	94.29	22.15
PGSC0003DMT400006183	Potato	cytosol	94.29	18.03
KRH65844	Soybean	cytosol	54.29	17.59
CDX81630	Canola	cytosol	91.43	17.49
Bra016706.1-P	Field mustard	cytosol	91.43	17.49
Bra003984.1-P	Field mustard	cytosol	91.43	17.39
CDY48394	Canola	cytosol	91.43	17.39
Solyc06g082650.2.1	Tomato	nucleus	94.29	16.02
HORVU4Hr1G016190.4	Barley	extracellular, golgi	91.43	15.92
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	97.14	15.53
TraesCS1D01G114100.1	Wheat	cytosol, mitochondrion	94.29	15.07
TraesCS1B01G132700.1	Wheat	cytosol, mitochondrion	94.29	15.07
TraesCS1A01G112500.1	Wheat	nucleus	94.29	15.07
Solyc06g082670.2.1	Tomato	plastid	94.29	15.07
PGSC0003DMT400078129	Potato	cytosol, mitochondrion	94.29	15.07
Os05t0169100-01	Rice	nucleus, plastid	94.29	15.07
Zm00001d033128_P001	Maize	plasma membrane, plastid	94.29	15.0
EER93866	Sorghum	cytosol	94.29	15.0
TraesCS4A01G204800.1	Wheat	plastid	91.43	14.75
TraesCS4B01G108400.1	Wheat	golgi, unclear	91.43	14.75
Os11t0220800-01	Rice	nucleus	94.29	14.73
EES06560	Sorghum	cytosol	94.29	14.73
GSMUA_Achr10P...	Banana	cytosol	94.29	14.73
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	94.29	14.67
AT1G14320.1	Thale cress	mitochondrion	91.43	14.55
CDX84036	Canola	cytosol, mitochondrion	91.43	14.55
CDY49095	Canola	mitochondrion	91.43	14.55
CDX96861	Canola	cytosol	91.43	14.55
CDY38756	Canola	mitochondrion	91.43	14.55
AT1G26910.1	Thale cress	mitochondrion	91.43	14.48
AT1G66580.1	Thale cress	cytosol, mitochondrion	91.43	14.48
CDY28582	Canola	cytosol, mitochondrion	91.43	14.48
CDY44087	Canola	cytosol, mitochondrion	91.43	14.48
CDY62060	Canola	mitochondrion	91.43	14.48
KRH72557	Soybean	nucleus	91.43	14.41
KRH16949	Soybean	nucleus	91.43	14.41
Solyc06g007520.2.1	Tomato	nucleus, unclear	94.29	14.41
KRH53698	Soybean	cytosol	91.43	14.35
KRH64232	Soybean	nucleus	91.43	14.35
TraesCS4D01G105600.1	Wheat	cytosol, mitochondrion	88.57	14.29
CDY39324	Canola	cytosol, mitochondrion	91.43	13.17
HORVU1Hr1G024710.4	Barley	mitochondrion	94.29	12.89
CDY33756	Canola	cytosol	91.43	12.85
KRG88858	Soybean	cytosol	65.71	12.37
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	94.29	12.22
KRG98102	Soybean	mitochondrion, plastid	91.43	12.17
CDY01747	Canola	mitochondrion	91.43	12.08
KRH66434	Soybean	cytosol, mitochondrion, plastid	62.86	11.89
Bra026839.1-P	Field mustard	mitochondrion	25.71	7.56
Bra019662.1-P	Field mustard	mitochondrion	25.71	7.56
Bra016269.1-P	Field mustard	mitochondrion	25.71	7.56
Bra007877.1-P	Field mustard	mitochondrion	25.71	7.5
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	8.57	2.54

Protein Annotations

Gene3D:3.90.1170.10	MapMan:35.2	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSMUA_AchrUn_randomG18970_001	EnsemblPlants:GSMUA_AchrUn_randomP18970_001
EnsemblPlants:GSMUA_AchrUn_randomT18970_001	InterPro:IPR036920	UniProt:M0UAF6	PANTHER:PTHR11726	PANTHER:PTHR11726:SF17	InterPro:Ribosomal_L10e
InterPro:Ribosomal_L10e/L16_sf	SUPFAM:SSF54686	UniParc:UPI000296B003	:	:	:

Description

60S ribosomal protein L10 [Source:GMGC_GENE;Acc:GSMUA_AchrUn_randomG18970_001]

Coordinates

chrchrUn_random:-:91179697..91179804

Molecular Weight (calculated)

4012.0 Da

IEP (calculated)

11.074

GRAVY (calculated)

-0.280

Length

35 amino acids

Sequence
(BLAST)

1: MTKYAGKDAF HLRARVHPFH VLRINKMLSC AGADR

Best Arabidopsis Sequence Match ( AT1G26910.2 )
(BLAST)

001: MKRKGVDEFP YCVHLVSWEK ENVSSEALEA ARIACNKYMV KSAGKDAFHL RIRVHPFHVL RINKMLSCAG ADRLQTGMRG AFGKALGTCA RVAIGQVLLS
101: VRCKDAHGHH AQEALRRAKF KFPGRQKIIV SRKWGFTKFN RADYTKLRQE KRIVPDGVNA KFLSCHGPLA NRQPGSAFLS AGAQ

Arabidopsis Description

RPL10B60S ribosomal protein L10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q08770]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.