Factsheet for Os11t0220800-01

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
cytosol 2
endoplasmic reticulum 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 21433289
nucleus: 23303719
nucleus: 23777608
nucleus: 26035336
plasma membrane: 27800704
plastid: 27992503

msms PMID: 23777608 doi

H Mujahid, F Tan, J Zhang, BR Nallamilli, K Pendarvis, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, MS 39762, USA.

msms PMID: 27800704 doi

J Cao, C Yang, L Li, L Jiang, Y Wu, C Wu, Q Bu, G Xia, X Liu, Y Luo, J Liu

Huai'an Institute of Agricultural Sciences, Huai'an, 223001, China., Institute of Analytical Chemistry and Synthetic and Functional Biomolecules Center, College of Chemistry and Molecular Engineering, Peking University, Beijing, 100871, China; and., Northeast Institute of Geography and Agroecology, Key Laboratory of Soybean Molecular Design Breeding, Chinese Academy of Sciences, Harbin, 150081, China., State Key Laboratory of Plant Genomics, Institute of Microbiology, Chinese Academy of Sciences, Beijing, 100101, China.

msms PMID: 26035336 doi

M Li, X Yin, K Sakata, P Yang, S Komatsu

§Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan., †Key Laboratory of Plant Germplasm Enhancement and Specialty Agriculture, Wuhan Botanical Garden, Chinese Academy of Sciences, Wuhan 430074, China., ‡National Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan.

msms PMID: 23303719 doi

Q He, L Chen, Y Xu, W Yu

State Key Laboratory for Agrobiotechnology, Institute of Plant Molecular Biology and Agricultural Biotechnology, School of Life Sciences, The Chinese University of Hong Kong, Shatin, Hong Kong.

msms PMID: 27992503 doi

S Xing, X Meng, L Zhou, H Mujahid, C Zhao, Y Zhang, C Wang, Z Peng

Department of Biochemistry, Molecular Biology, Entomology and Plant Pathology, Mississippi State University, Starkville, Mississippi, United States of America., Institute of Food Crops, Jiangsu Academy of Agricultural Sciences, Jiangsu High Quality Rice Research and Development Center, Nanjing Branch of China National Center for Rice Improvement, Nanjing, Jiangsu, China.

msms PMID: 21433289 doi

S Reiland, J Grossmann, K Baerenfaller, P Gehrig, A Nunes-Nesi, AR Fernie, W Gruissem, S Baginsky

Department of Biology, Plant Biotechnology, ETH Zurich, Zurich, Switzerland.

PPI

Inferred distinct locusB in Crop

locusB	locations
Os03t0685600-01

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26910.1	Os03t0685600-01	AT1G71840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	14.73	94.29
EES06560	Sorghum	cytosol	93.3	93.3
Os05t0169100-01	Rice	nucleus, plastid	88.84	90.87
TraesCS4A01G204800.1	Wheat	plastid	87.95	90.78
TraesCS4B01G108400.1	Wheat	golgi, unclear	87.5	90.32
TraesCS4D01G105600.1	Wheat	cytosol, mitochondrion	87.05	89.86
Solyc06g082670.2.1	Tomato	plastid	84.82	86.76
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	87.05	86.67
KRH16949	Soybean	nucleus	85.27	86.04
KRH72557	Soybean	nucleus	85.27	86.04
KRH53698	Soybean	cytosol	85.27	85.65
KRH64232	Soybean	nucleus	85.27	85.65
GSMUA_Achr10P...	Banana	cytosol	85.27	85.27
AT1G26910.1	Thale cress	mitochondrion	82.59	83.71
AT1G66580.1	Thale cress	cytosol, mitochondrion	82.14	83.26
CDY44087	Canola	cytosol, mitochondrion	81.7	82.81
CDY28582	Canola	cytosol, mitochondrion	81.7	82.81
CDY38756	Canola	mitochondrion	81.25	82.73
CDX84036	Canola	cytosol, mitochondrion	81.25	82.73
CDX96861	Canola	cytosol	81.25	82.73
CDY49095	Canola	mitochondrion	81.25	82.73
Solyc06g007520.2.1	Tomato	nucleus, unclear	84.38	82.53
AT1G14320.1	Thale cress	mitochondrion	80.8	82.27
CDY62060	Canola	mitochondrion	80.8	81.9
CDX81630	Canola	cytosol	65.62	80.33
Solyc06g082650.2.1	Tomato	nucleus	73.66	80.1
Bra016706.1-P	Field mustard	cytosol	65.18	79.78
CDY48394	Canola	cytosol	64.73	78.8
Bra003984.1-P	Field mustard	cytosol	64.73	78.8
HORVU4Hr1G016190.4	Barley	extracellular, golgi	70.09	78.11
GSMUA_Achr6P15860_001	Banana	mitochondrion	51.79	77.85
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	74.55	76.26
CDY39324	Canola	cytosol, mitochondrion	81.25	74.9
Bra026839.1-P	Field mustard	mitochondrion	38.84	73.11
CDY33756	Canola	cytosol	81.25	73.09
KRG98102	Soybean	mitochondrion, plastid	85.27	72.62
Bra007877.1-P	Field mustard	mitochondrion	38.84	72.5
Bra019662.1-P	Field mustard	mitochondrion	38.39	72.27
Bra016269.1-P	Field mustard	mitochondrion	38.39	72.27
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	87.05	72.22
KRH65844	Soybean	cytosol	34.38	71.3
KRG88858	Soybean	cytosol	58.48	70.43
Os03t0332500-00	Rice	cytosol	74.11	70.04
KRH66434	Soybean	cytosol, mitochondrion, plastid	57.59	69.73
CDY01747	Canola	mitochondrion	81.25	68.68
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	30.8	58.47
PGSC0003DMT400053166	Potato	cytosol	33.93	33.33

Protein Annotations

MapMan:17.1.2.1.9	Gene3D:2.20.25.330	Gene3D:3.90.1170.10	EntrezGene:4350098	ProteinID:ABA92102.1	EMBL:AK060902
EMBL:AK102971	ProteinID:BAF27887.1	ProteinID:BAT13249.1	ProteinID:EAZ17844.1	GO:GO:0000027	GO:GO:0003674
GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538
GO:GO:0022625	InterPro:IPR036920	EnsemblPlantsGene:Os11g0220800	EnsemblPlants:Os11t0220800-01	PFAM:PF00252	PIRSF:PIRSF005590
ScanProsite:PS01257	PANTHER:PTHR11726	PANTHER:PTHR11726:SF17	UniProt:Q0ITS8	InterPro:Ribosomal_L10e	InterPro:Ribosomal_L10e/L16
InterPro:Ribosomal_L10e/L16_sf	InterPro:Ribosomal_L10e_CS	SUPFAM:SSF54686	TIGRFAMs:TIGR00279	UniParc:UPI00006823F7	RefSeq:XP_015617097.1

Description

SC34Similar to 60S ribosomal protein L10 (QM protein homolog). (Os11t0220800-01)

Coordinates

chr11:+:6321270..6323933

Molecular Weight (calculated)

25348.0 Da

IEP (calculated)

10.903

GRAVY (calculated)

-0.579

Length

224 amino acids

Sequence
(BLAST)

001: MGRRPARCYR QIKNKPYPKS RYCRGVPDPK IRIYDVGMKK KGVDEFPYCV HLVSWEKENV SSEALEAARI ACNKYMTKNA GKDAFHLRVR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KPQGTCARVD IGQVLLSVRC KESNAKHAEE ALRRAKFKFP GRQKIIHSRK WGFTKFTREE YVKLKAEGRI MSDGVNAQLL
201: GSHGRLAKRA PGKAFLAETI QASA

Best Arabidopsis Sequence Match ( AT1G66580.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDNHGVHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAE YTKLRAMKRI VPDGVNAKFL
201: SNHGPLANRQ PGSAFISATS E

Arabidopsis Description

RPL10C60S ribosomal protein L10-3 [Source:UniProtKB/Swiss-Prot;Acc:Q93W22]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.