Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 3
- plastid 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400006183 | Potato | cytosol | 40.79 | 50.82 |
| PGSC0003DMT400078129 | Potato | cytosol, mitochondrion | 41.23 | 42.92 |
| TraesCS4A01G204800.1 | Wheat | plastid | 35.09 | 36.87 |
| TraesCS4B01G108400.1 | Wheat | golgi, unclear | 34.65 | 36.41 |
| TraesCS4D01G105600.1 | Wheat | cytosol, mitochondrion | 34.65 | 36.41 |
| EES06560 | Sorghum | cytosol | 35.53 | 36.16 |
| Os11t0220800-01 | Rice | nucleus | 33.33 | 33.93 |
| HORVU4Hr1G016190.4 | Barley | extracellular, golgi | 22.37 | 25.37 |
Protein Annotations
| Gene3D:2.20.25.330 | Gene3D:3.90.1170.10 | MapMan:35.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR036920 |
| UniProt:M1BUI6 | EnsemblPlantsGene:PGSC0003DMG400020636 | PGSC:PGSC0003DMG400020636 | EnsemblPlants:PGSC0003DMT400053166 | PANTHER:PTHR11726 | PANTHER:PTHR11726:SF22 |
| InterPro:Ribosomal_L10e | InterPro:Ribosomal_L10e/L16_sf | SUPFAM:SSF54686 | UniParc:UPI000296492B | : | : |
Description
60S ribosomal protein L10 [Source:PGSC_GENE;Acc:PGSC0003DMG400020636]
Coordinates
chr6:-:2725481..2734846
Molecular Weight (calculated)
26033.3 Da
IEP (calculated)
10.004
GRAVY (calculated)
-0.550
Length
228 amino acids
Sequence
(BLAST)
(BLAST)
001: MVLYPLLDVD EHTPLPIHRE RRPGPFNTSP YVTSFGSESG DLYCILIVVS INDRSIQIYD SLRGGALHNS SVENEIKKYA QLIPMYLSKS DFYGKKGIDI
101: SSHPKYKSHS ECDFFEMIYV NDIPQQDAGR LRRRTIPHTE LAMGRIRCKD GNANHAQEAL RRAKFKFPGR QKIIVSRKWG FTKFSRTDYL KYKSENRIVP
201: DGVNAKLLGC HGRLAARQPG RAFLEAAN
101: SSHPKYKSHS ECDFFEMIYV NDIPQQDAGR LRRRTIPHTE LAMGRIRCKD GNANHAQEAL RRAKFKFPGR QKIIVSRKWG FTKFSRTDYL KYKSENRIVP
201: DGVNAKLLGC HGRLAARQPG RAFLEAAN
001: MKRKGVDEFP YCVHLVSWEK ENVSSEALEA ARIACNKYMV KSAGKDAFHL RIRVHPFHVL RINKMLSCAG ADRLQTGMRG AFGKALGTCA RVAIGQVLLS
101: VRCKDAHGHH AQEALRRAKF KFPGRQKIIV SRKWGFTKFN RADYTKLRQE KRIVPDGVNA KFLSCHGPLA NRQPGSAFLS AGAQ
101: VRCKDAHGHH AQEALRRAKF KFPGRQKIIV SRKWGFTKFN RADYTKLRQE KRIVPDGVNA KFLSCHGPLA NRQPGSAFLS AGAQ
Arabidopsis Description
RPL10B60S ribosomal protein L10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q08770]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.