Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
Inferred from Arabidopsis experimental PPI
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G108400.1 | Wheat | golgi, unclear | 99.54 | 99.54 |
| TraesCS4A01G204800.1 | Wheat | plastid | 99.08 | 99.08 |
| EES06560 | Sorghum | cytosol | 92.63 | 89.73 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion | 14.29 | 88.57 |
| TraesCS1D01G114100.1 | Wheat | cytosol, mitochondrion | 88.94 | 88.13 |
| Os11t0220800-01 | Rice | nucleus | 89.86 | 87.05 |
| KRH64232 | Soybean | nucleus | 89.4 | 87.0 |
| KRH53698 | Soybean | cytosol | 89.4 | 87.0 |
| KRH72557 | Soybean | nucleus | 88.02 | 86.04 |
| KRH16949 | Soybean | nucleus | 88.02 | 86.04 |
| Solyc06g082670.2.1 | Tomato | plastid | 86.64 | 85.84 |
| GSMUA_Achr10P... | Banana | cytosol | 87.56 | 84.82 |
| AT1G26910.1 | Thale cress | mitochondrion | 85.25 | 83.71 |
| CDY38756 | Canola | mitochondrion | 84.79 | 83.64 |
| GSMUA_Achr8P01550_001 | Banana | cytosol, mitochondrion | 86.64 | 83.56 |
| CDX84036 | Canola | cytosol, mitochondrion | 84.33 | 83.18 |
| AT1G14320.1 | Thale cress | mitochondrion | 84.33 | 83.18 |
| CDX96861 | Canola | cytosol | 84.33 | 83.18 |
| CDY49095 | Canola | mitochondrion | 84.33 | 83.18 |
| AT1G66580.1 | Thale cress | cytosol, mitochondrion | 84.33 | 82.81 |
| HORVU4Hr1G016190.4 | Barley | extracellular, golgi | 76.5 | 82.59 |
| CDY62060 | Canola | mitochondrion | 83.87 | 82.35 |
| CDY44087 | Canola | cytosol, mitochondrion | 83.87 | 82.35 |
| CDY28582 | Canola | cytosol, mitochondrion | 83.87 | 82.35 |
| Solyc06g007520.2.1 | Tomato | nucleus, unclear | 86.64 | 82.1 |
| CDX81630 | Canola | cytosol | 68.2 | 80.87 |
| Bra016706.1-P | Field mustard | cytosol | 67.74 | 80.33 |
| CDY48394 | Canola | cytosol | 67.28 | 79.35 |
| Bra003984.1-P | Field mustard | cytosol | 67.28 | 79.35 |
| GSMUA_Achr6P15860_001 | Banana | mitochondrion | 53.92 | 78.52 |
| TraesCS4D01G173700.1 | Wheat | cytosol, mitochondrion | 79.26 | 76.79 |
| Solyc06g082650.2.1 | Tomato | nucleus | 72.81 | 76.7 |
| Bra016269.1-P | Field mustard | mitochondrion | 41.47 | 75.63 |
| Bra026839.1-P | Field mustard | mitochondrion | 41.47 | 75.63 |
| CDY39324 | Canola | cytosol, mitochondrion | 84.33 | 75.31 |
| Bra019662.1-P | Field mustard | mitochondrion | 41.01 | 74.79 |
| VIT_06s0004g08260.t01 | Wine grape | cytosol, mitochondrion | 74.65 | 73.97 |
| Bra007877.1-P | Field mustard | mitochondrion | 40.55 | 73.33 |
| CDY33756 | Canola | cytosol | 83.87 | 73.09 |
| KRG98102 | Soybean | mitochondrion, plastid | 86.18 | 71.1 |
| VIT_01s0150g00580.t01 | Wine grape | endoplasmic reticulum | 88.02 | 70.74 |
| KRH65844 | Soybean | cytosol | 35.02 | 70.37 |
| KRH66434 | Soybean | cytosol, mitochondrion, plastid | 59.91 | 70.27 |
| KRG88858 | Soybean | cytosol | 59.91 | 69.89 |
| CDY01747 | Canola | mitochondrion | 84.79 | 69.43 |
| GSMUA_Achr6P08650_001 | Banana | endoplasmic reticulum, extracellular | 31.8 | 58.47 |
| PGSC0003DMT400053166 | Potato | cytosol | 36.41 | 34.65 |
Protein Annotations
| MapMan:17.1.2.1.9 | Gene3D:2.20.25.330 | Gene3D:3.90.1170.10 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR036920 |
| PFAM:PF00252 | PIRSF:PIRSF005590 | ScanProsite:PS01257 | PANTHER:PTHR11726 | PANTHER:PTHR11726:SF17 | InterPro:Ribosomal_L10e |
| InterPro:Ribosomal_L10e/L16 | InterPro:Ribosomal_L10e/L16_sf | InterPro:Ribosomal_L10e_CS | SUPFAM:SSF54686 | TIGRFAMs:TIGR00279 | EnsemblPlantsGene:TraesCS4D01G105600 |
| EnsemblPlants:TraesCS4D01G105600.1 | TIGR:cd01433 | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:84276822..84279364
Molecular Weight (calculated)
24442.1 Da
IEP (calculated)
10.912
GRAVY (calculated)
-0.508
Length
217 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRRPARCYR QIKNKPYPKS RYCRGVPDPK IRIYDVGMKK KGVDEFPSCV HLVSWEKENV SSEALEAARI ACNKYMTKNA GKDAFHLRVR VHTYHVLRIN
101: KMLSCAGADR LQTGMRGAFG KPLGTCARVD IGQVLLSVRC KESNAVHADE ALRRAKFKFP GRQKIIRSRK WGFTKFNKAD YIKYKSEGRI VPDGVNAKLL
201: GVHGPIAKRA PGQAILA
101: KMLSCAGADR LQTGMRGAFG KPLGTCARVD IGQVLLSVRC KESNAVHADE ALRRAKFKFP GRQKIIRSRK WGFTKFNKAD YIKYKSEGRI VPDGVNAKLL
201: GVHGPIAKRA PGQAILA
001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD FTKLRQEKRV VPDGVNAKFL
201: SCHGPLANRQ PGSAFLPAHY
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD FTKLRQEKRV VPDGVNAKFL
201: SCHGPLANRQ PGSAFLPAHY
Arabidopsis Description
RPL10A60S ribosomal protein L10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VT9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.