Subcellular Localization
min:
: max
Winner_takes_all: endoplasmic reticulum
Predictor Summary:
Predictor Summary:
- mitochondrion 2
- nucleus 2
- endoplasmic reticulum 6
- extracellular 3
- vacuole 3
- plasma membrane 3
- golgi 3
- plastid 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| VIT_11s0016g02220.t01 | |
| VIT_18s0164g00020.t01 |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G26910.1 | VIT_11s0016g02220.t01 | AT1G71840.1 | 21798944 |
| AT1G26910.1 | VIT_18s0164g00020.t01 | AT1G71840.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion | 12.22 | 94.29 |
| Solyc06g082670.2.1 | Tomato | plastid | 75.19 | 92.69 |
| PGSC0003DMT400078129 | Potato | cytosol, mitochondrion | 75.19 | 92.69 |
| GSMUA_Achr10P... | Banana | cytosol | 76.67 | 92.41 |
| KRH72557 | Soybean | nucleus | 75.93 | 92.34 |
| KRH16949 | Soybean | nucleus | 75.93 | 92.34 |
| KRH64232 | Soybean | nucleus | 75.93 | 91.93 |
| KRH53698 | Soybean | cytosol | 75.93 | 91.93 |
| PGSC0003DMT400006183 | Potato | cytosol | 62.22 | 91.8 |
| GSMUA_Achr8P01550_001 | Banana | cytosol, mitochondrion | 76.3 | 91.56 |
| EER93866 | Sorghum | cytosol | 72.96 | 89.55 |
| Zm00001d033128_P001 | Maize | plasma membrane, plastid | 72.59 | 89.09 |
| Os05t0169100-01 | Rice | nucleus, plastid | 72.22 | 89.04 |
| TraesCS1D01G114100.1 | Wheat | cytosol, mitochondrion | 72.22 | 89.04 |
| TraesCS1A01G112500.1 | Wheat | nucleus | 72.22 | 89.04 |
| TraesCS1B01G132700.1 | Wheat | cytosol, mitochondrion | 72.22 | 89.04 |
| TraesCS4A01G204800.1 | Wheat | plastid | 71.48 | 88.94 |
| TraesCS4B01G108400.1 | Wheat | golgi, unclear | 71.11 | 88.48 |
| EES06560 | Sorghum | cytosol | 73.33 | 88.39 |
| AT1G26910.1 | Thale cress | mitochondrion | 72.22 | 88.24 |
| Solyc06g007520.2.1 | Tomato | nucleus, unclear | 74.81 | 88.21 |
| CDX96861 | Canola | cytosol | 71.85 | 88.18 |
| TraesCS4D01G105600.1 | Wheat | cytosol, mitochondrion | 70.74 | 88.02 |
| CDX84036 | Canola | cytosol, mitochondrion | 71.48 | 87.73 |
| CDY49095 | Canola | mitochondrion | 71.48 | 87.73 |
| CDY38756 | Canola | mitochondrion | 71.48 | 87.73 |
| AT1G14320.1 | Thale cress | mitochondrion | 71.48 | 87.73 |
| Os11t0220800-01 | Rice | nucleus | 72.22 | 87.05 |
| CDX81630 | Canola | cytosol | 58.89 | 86.89 |
| CDY28582 | Canola | cytosol, mitochondrion | 71.11 | 86.88 |
| AT1G66580.1 | Thale cress | cytosol, mitochondrion | 71.11 | 86.88 |
| CDY44087 | Canola | cytosol, mitochondrion | 71.11 | 86.88 |
| CDY62060 | Canola | mitochondrion | 71.11 | 86.88 |
| GSMUA_Achr6P15860_001 | Banana | mitochondrion | 47.78 | 86.58 |
| Bra016706.1-P | Field mustard | cytosol | 58.52 | 86.34 |
| CDY48394 | Canola | cytosol | 57.78 | 84.78 |
| Bra003984.1-P | Field mustard | cytosol | 57.78 | 84.78 |
| Solyc06g082650.2.1 | Tomato | nucleus | 62.96 | 82.52 |
| Bra026839.1-P | Field mustard | mitochondrion | 36.3 | 82.35 |
| Bra019662.1-P | Field mustard | mitochondrion | 35.56 | 80.67 |
| Bra016269.1-P | Field mustard | mitochondrion | 35.56 | 80.67 |
| CDY39324 | Canola | cytosol, mitochondrion | 72.22 | 80.25 |
| Bra007877.1-P | Field mustard | mitochondrion | 35.19 | 79.17 |
| HORVU4Hr1G016190.4 | Barley | extracellular, golgi | 58.52 | 78.61 |
| CDY33756 | Canola | cytosol | 71.85 | 77.91 |
| VIT_06s0004g08260.t01 | Wine grape | cytosol, mitochondrion | 62.96 | 77.63 |
| KRG98102 | Soybean | mitochondrion, plastid | 74.81 | 76.81 |
| KRH66434 | Soybean | cytosol, mitochondrion, plastid | 51.85 | 75.68 |
| CDY01747 | Canola | mitochondrion | 72.96 | 74.34 |
| KRG88858 | Soybean | cytosol | 51.11 | 74.19 |
| HORVU1Hr1G024710.4 | Barley | mitochondrion | 69.63 | 73.44 |
| KRH65844 | Soybean | cytosol | 29.26 | 73.15 |
| GSMUA_Achr6P08650_001 | Banana | endoplasmic reticulum, extracellular | 28.89 | 66.1 |
Protein Annotations
| EntrezGene:100241995 | wikigene:100241995 | EntrezGene:100262228 | wikigene:100262228 | MapMan:17.1.2.1.9 | Gene3D:2.20.25.330 |
| Gene3D:3.90.1170.10 | ProteinID:CCB52293 | ProteinID:CCB52293.1 | UniProt:F6HJ95 | EMBL:FN595770 | GO:GO:0000027 |
| GO:GO:0003674 | GO:GO:0003676 | GO:GO:0003723 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005488 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005829 | GO:GO:0005840 |
| GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0016043 |
| GO:GO:0019538 | GO:GO:0022625 | InterPro:IPR036920 | EntrezGene:LOC100241995 | wikigene:LOC100241995 | EntrezGene:LOC100262228 |
| wikigene:LOC100262228 | PFAM:PF00252 | PIRSF:PIRSF005590 | ScanProsite:PS01257 | PANTHER:PTHR11726 | PANTHER:PTHR11726:SF22 |
| InterPro:Ribosomal_L10e | InterPro:Ribosomal_L10e/L16 | InterPro:Ribosomal_L10e/L16_sf | InterPro:Ribosomal_L10e_CS | SUPFAM:SSF54686 | SignalP:SignalP-noTM |
| TIGRFAMs:TIGR00279 | UniParc:UPI0002108240 | ArrayExpress:VIT_01s0150g00580 | EnsemblPlantsGene:VIT_01s0150g00580 | EnsemblPlants:VIT_01s0150g00580.t01 | RefSeq:XP_002264609 |
| RefSeq:XP_002264609.1 | RefSeq:XP_002275270 | RefSeq:XP_002275270.1 | RefSeq:XP_002275297 | RefSeq:XP_002275297.1 | SEG:seg |
Description
No Description!
Coordinates
chr1:+:22895505..22897685
Molecular Weight (calculated)
30444.4 Da
IEP (calculated)
10.902
GRAVY (calculated)
-0.371
Length
270 amino acids
Sequence
(BLAST)
(BLAST)
001: MTILLFFLCT KYCFGKLFQN CPFVFPINSH HGLHVSSHGG ARAGNIMGRR PARCYRQIKN KPYPKSRYCR GVPDPKIRIY DVGMKKKGVD EFPFCVHLVS
101: WEKENVSSEA LEAARIACNK YMTKFAGKDA FHLRVRVHPF HVLRINKMLS CAGADRLQTG MRGAFGKPQG TCARVNIGQV LLSVRCKDGN GNHAQEALRR
201: AKFKFPGRQK IIVSRKWGFT KFSRADYVKW KQENRIMPDG VNAKLLGCHG PLAQRQPGRA FLSGAVESTA
101: WEKENVSSEA LEAARIACNK YMTKFAGKDA FHLRVRVHPF HVLRINKMLS CAGADRLQTG MRGAFGKPQG TCARVNIGQV LLSVRCKDGN GNHAQEALRR
201: AKFKFPGRQK IIVSRKWGFT KFSRADYVKW KQENRIMPDG VNAKLLGCHG PLAQRQPGRA FLSGAVESTA
001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPYCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD YTKLRQEKRI VPDGVNAKFL
201: SCHGPLANRQ PGSAFLSAGA Q
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD YTKLRQEKRI VPDGVNAKFL
201: SCHGPLANRQ PGSAFLSAGA Q
Arabidopsis Description
RPL10B60S ribosomal protein L10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q08770]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.