Factsheet for Zm00001d033128_P001

Subcellular Localization

min:

: max

Winner_takes_all: plasma membrane, plastid

Predictor Summary:

cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plasma membrane, plastid
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

extracellular: 20408568
plastid: 22065420
plastid: 23198870
plasma membrane: 23353019
plasma membrane: 23508561
mitochondrion: 27297264

msms PMID: 23353019 doi

D Hopff, S Wienkoop, S Lüthje

University of Hamburg, Biocenter Klein Flottbek and Botanical Garden, Plant Physiology, Ohnhorststraße 18, D-22609 Hamburg, Germany.

msms PMID: 27297264 doi

D Dahal, KJ Newton, BP Mooney

Division of Biological Sciences, ‡Department of Biochemistry, and §The Charles W Gehrke Proteomics Center, University of Missouri , Columbia, Missouri 65211, United States.

msms PMID: 23198870 doi

M Huang, G Friso, K Nishimura, X Qu, PD Olinares, W Majeran, Q Sun, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, United States.

msms PMID: 20408568 doi

W Ma, N Muthreich, C Liao, M Franz-Wachtel, W Schütz, F Zhang, F Hochholdinger, C Li

Department of Plant Nutrition, China Agricultural University, Beijing, PR China.

msms PMID: 22065420 doi

W Majeran, G Friso, Y Asakura, X Qu, M Huang, L Ponnala, KP Watkins, A Barkan, KJ van Wijk

Department of Plant Biology, Cornell University, Ithaca, New York 14853, USA.

msms PMID: 23508561 doi

Z Zhang, P Voothuluru, M Yamaguchi, RE Sharp, SC Peck

Division of Biochemistry, University of Missouri Columbia, MO, USA ; Christopher S. Bond Life Sciences Center, University of Missouri Columbia, MO, USA ; Interdisciplinary Plant Group, University of Missouri Columbia, MO, USA.

PPI

Inferred distinct locusB in Crop

locusB	locations
Zm00001d011779_P005
Zm00001d041945_P003

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26910.1	Zm00001d011779_P005	AT1G71840.1	21798944
AT1G26910.1	Zm00001d041945_P003	AT1G71840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EER93866	Sorghum	cytosol	99.09	99.09
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	15.0	94.29
Os05t0169100-01	Rice	nucleus, plastid	91.36	91.78
TraesCS1D01G114100.1	Wheat	cytosol, mitochondrion	90.45	90.87
TraesCS1B01G132700.1	Wheat	cytosol, mitochondrion	90.45	90.87
TraesCS1A01G112500.1	Wheat	nucleus	90.45	90.87
Solyc06g082670.2.1	Tomato	plastid	90.0	90.41
GSMUA_Achr10P...	Banana	cytosol	90.45	88.84
KRH64232	Soybean	nucleus	90.0	88.79
KRH53698	Soybean	cytosol	90.0	88.79
KRH72557	Soybean	nucleus	89.09	88.29
KRH16949	Soybean	nucleus	89.09	88.29
AT1G26910.1	Thale cress	mitochondrion	87.27	86.88
Solyc06g007520.2.1	Tomato	nucleus, unclear	90.0	86.46
CDY38756	Canola	mitochondrion	86.36	86.36
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	88.18	86.22
CDY28582	Canola	cytosol, mitochondrion	86.36	85.97
CDY44087	Canola	cytosol, mitochondrion	86.36	85.97
AT1G66580.1	Thale cress	cytosol, mitochondrion	85.91	85.52
AT1G14320.1	Thale cress	mitochondrion	85.45	85.45
CDY62060	Canola	mitochondrion	85.45	85.07
CDY49095	Canola	mitochondrion	84.55	84.55
CDX96861	Canola	cytosol	84.55	84.55
CDX84036	Canola	cytosol, mitochondrion	84.55	84.55
CDY48394	Canola	cytosol	69.09	82.61
Bra003984.1-P	Field mustard	cytosol	69.09	82.61
GSMUA_Achr6P15860_001	Banana	mitochondrion	55.91	82.55
CDX81630	Canola	cytosol	68.64	82.51
Bra016706.1-P	Field mustard	cytosol	68.18	81.97
Solyc06g082650.2.1	Tomato	nucleus	74.55	79.61
Bra016269.1-P	Field mustard	mitochondrion	42.73	78.99
Bra007877.1-P	Field mustard	mitochondrion	42.73	78.33
CDY39324	Canola	cytosol, mitochondrion	84.55	76.54
Bra026839.1-P	Field mustard	mitochondrion	41.36	76.47
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	75.45	75.8
Bra019662.1-P	Field mustard	mitochondrion	40.91	75.63
CDY33756	Canola	cytosol	84.09	74.3
KRG98102	Soybean	mitochondrion, plastid	88.18	73.76
HORVU1Hr1G024710.4	Barley	mitochondrion	85.0	73.05
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	89.09	72.59
CDY01747	Canola	mitochondrion	86.36	71.7
KRG88858	Soybean	cytosol	60.45	71.51
KRH65844	Soybean	cytosol	35.0	71.3
KRH66434	Soybean	cytosol, mitochondrion, plastid	59.55	70.81
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	33.18	61.86

Protein Annotations

MapMan:17.1.2.1.9	Gene3D:2.20.25.330	Gene3D:3.90.1170.10	UniProt:B6T5B9	EMBL:EU960184	EMBL:EU961310
EMBL:EU971055	EMBL:EU976400	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	GO:GO:0030529	InterPro:IPR036920
ProteinID:ONM06816.1	PFAM:PF00252	PIRSF:PIRSF005590	ScanProsite:PS01257	PANTHER:PTHR11726	PANTHER:PTHR11726:SF17
InterPro:Ribosomal_L10e	InterPro:Ribosomal_L10e/L16	InterPro:Ribosomal_L10e/L16_sf	InterPro:Ribosomal_L10e_CS	SUPFAM:SSF54686	TIGRFAMs:TIGR00279
UniParc:UPI000182C4E2	EnsemblPlantsGene:Zm00001d033128	EnsemblPlants:Zm00001d033128_P001	EnsemblPlants:Zm00001d033128_T001	:	:

Description

60S ribosomal protein L10-3

Coordinates

chr1:+:251575859..251578200

Molecular Weight (calculated)

24910.4 Da

IEP (calculated)

10.883

GRAVY (calculated)

-0.586

Length

220 amino acids

Sequence
(BLAST)

001: MGRRPARCYR QIKNKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPYCV HLVSWEKENV SSEALEAARI ACNKYMTKSA GKDAFHLRVR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KPQGTCARVD IGQVLLSVRC KDNNAAHASE ALRRAKFKFP GRQKIIESRK WGFTKFSRAD YLKYKSEGRI VPDGVNAKLL
201: GNHGRLEKRA PGKAFLEAVA

Best Arabidopsis Sequence Match ( AT1G66580.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDNHGVHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAE YTKLRAMKRI VPDGVNAKFL
201: SNHGPLANRQ PGSAFISATS E

Arabidopsis Description

RPL10C60S ribosomal protein L10-3 [Source:UniProtKB/Swiss-Prot;Acc:Q93W22]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.