Factsheet for TraesCS1A01G112500.1

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

cytosol 2
extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion
MultiLoc:	cytosol
PProwler:	secretory
TargetP:	mitochondrion
WoLF PSORT:	mitochondrion
YLoc:	cytosol

nucleus: 17021941

plastid: 22160430
golgi: 25769308
unclear: 25769308
nucleus: 26228564

gfp PMID: 17021941 doi

G Dong, Z Ni, Y Yao, X Nie, Q Sun

Department of Plant Genetics & Breeding and State Key Laboratory for Agrobiotechnology, China Agricultural University, Haidian district, Beijing, 100094, China.

msms PMID: 22160430 doi

AH Kamal, K Cho, S Komatsu, N Uozumi, JS Choi, SH Woo

Department of Crop Science, Chungbuk National University, 410 Seongbong-ro, Heungdeok-gu, Cheongju, Chungbuk, 361-763, Korea.

msms PMID: 25769308 doi

AL Chateigner-Boutin, M Suliman, B Bouchet, C Alvarado, V Lollier, H Rogniaux, F Guillon, C Larré

INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France colette.larre@nantes.inra.fr., INRA, UR1268 Biopolymères, Interactions Assemblages, F-44316 Nantes, France.

msms PMID: 26228564 doi

E Bancel, T Bonnot, M Davanture, G Branlard, M Zivy, P Martre

Blaise Pascal University, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, Avenue des Landais, F-63 170 Aubière, France., CNRS, PAPPSO, UMR 0320/8120 Génétique Quantitative et Évolution - Le Moulon, F-91190 Gif-sur-Yvette, France., INRA, UMR1095 Genetics, Diversity and Ecophysiology of Cereals, 5 chemin de Beaulieu, F-63 039 Clermont-Ferrand, France.

PPI

Inferred distinct locusB in Crop

locusB	locations
TraesCS1A01G358200.1
TraesCS1B01G374800.1
TraesCS1D01G363000.1
TraesCS2A01G126700.2
TraesCS2B01G148600.2
TraesCS2D01G129200.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26910.1	TraesCS1A01G358200.1	AT1G71840.1	21798944
AT1G26910.1	TraesCS1B01G374800.1	AT1G71840.1	21798944
AT1G26910.1	TraesCS1D01G363000.1	AT1G71840.1	21798944
AT1G26910.1	TraesCS2A01G126700.2	AT1G71840.1	21798944
AT1G26910.1	TraesCS2B01G148600.2	AT1G71840.1	21798944
AT1G26910.1	TraesCS2D01G129200.1	AT1G71840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS1D01G114100.1	Wheat	cytosol, mitochondrion	100.0	100.0
TraesCS1B01G132700.1	Wheat	cytosol, mitochondrion	100.0	100.0
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	15.07	94.29
Os05t0169100-01	Rice	nucleus, plastid	92.24	92.24
EER93866	Sorghum	cytosol	91.78	91.36
Zm00001d033128_P001	Maize	plasma membrane, plastid	90.87	90.45
Solyc06g082670.2.1	Tomato	plastid	89.95	89.95
TraesCS4A01G204800.1	Wheat	plastid	89.04	89.86
KRH64232	Soybean	nucleus	90.41	88.79
KRH53698	Soybean	cytosol	90.41	88.79
KRH72557	Soybean	nucleus	89.95	88.74
KRH16949	Soybean	nucleus	89.95	88.74
GSMUA_Achr10P...	Banana	cytosol	89.04	87.05
Solyc06g007520.2.1	Tomato	nucleus, unclear	89.95	86.03
AT1G26910.1	Thale cress	mitochondrion	85.84	85.07
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	87.21	84.89
CDY44087	Canola	cytosol, mitochondrion	85.39	84.62
CDY28582	Canola	cytosol, mitochondrion	85.39	84.62
CDX96861	Canola	cytosol	84.47	84.09
AT1G14320.1	Thale cress	mitochondrion	84.47	84.09
CDX84036	Canola	cytosol, mitochondrion	84.47	84.09
CDY38756	Canola	mitochondrion	84.47	84.09
CDY62060	Canola	mitochondrion	84.47	83.71
AT1G66580.1	Thale cress	cytosol, mitochondrion	84.47	83.71
CDY49095	Canola	mitochondrion	84.02	83.64
CDX81630	Canola	cytosol	68.49	81.97
GSMUA_Achr6P15860_001	Banana	mitochondrion	55.71	81.88
Bra016706.1-P	Field mustard	cytosol	68.04	81.42
Bra003984.1-P	Field mustard	cytosol	68.04	80.98
CDY48394	Canola	cytosol	68.04	80.98
Solyc06g082650.2.1	Tomato	nucleus	75.34	80.1
HORVU1Hr1G024710.4	Barley	mitochondrion	91.78	78.52
Bra007877.1-P	Field mustard	mitochondrion	42.01	76.67
Bra026839.1-P	Field mustard	mitochondrion	41.55	76.47
CDY39324	Canola	cytosol, mitochondrion	84.02	75.72
Bra016269.1-P	Field mustard	mitochondrion	41.1	75.63
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	74.89	74.89
Bra019662.1-P	Field mustard	mitochondrion	40.64	74.79
CDY33756	Canola	cytosol	84.02	73.9
KRG98102	Soybean	mitochondrion, plastid	88.13	73.38
KRG88858	Soybean	cytosol	62.1	73.12
KRH66434	Soybean	cytosol, mitochondrion, plastid	61.64	72.97
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	89.04	72.22
KRH65844	Soybean	cytosol	34.7	70.37
CDY01747	Canola	mitochondrion	84.47	69.81
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	32.88	61.02

Protein Annotations

MapMan:17.1.2.1.9	Gene3D:2.20.25.330	Gene3D:3.90.1170.10	ncoils:Coil	GO:GO:0003674	GO:GO:0003735
GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538
InterPro:IPR036920	PFAM:PF00252	PIRSF:PIRSF005590	ScanProsite:PS01257	PANTHER:PTHR11726	PANTHER:PTHR11726:SF17
InterPro:Ribosomal_L10e	InterPro:Ribosomal_L10e/L16	InterPro:Ribosomal_L10e/L16_sf	InterPro:Ribosomal_L10e_CS	SUPFAM:SSF54686	TIGRFAMs:TIGR00279
EnsemblPlantsGene:TraesCS1A01G112500	EnsemblPlants:TraesCS1A01G112500.1	TIGR:cd01433	:	:	:

Description

No Description!

Coordinates

chr1A:+:114544744..114546388

Molecular Weight (calculated)

24732.4 Da

IEP (calculated)

11.102

GRAVY (calculated)

-0.505

Length

219 amino acids

Sequence
(BLAST)

001: MGRRPARCYR QIKNKPYPKS RYCRGVPDPK IRIYDVGMKK KGVDEFSHCV HLVSWEKENV SSEALEAARI ACNKYMTKHA GKDAFHLRVR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KPQGVCARVA IGQVLLSVRC KPNNAIHATE ALRRAKFKFP GRQKIIESRK WGFTKFNRND YLKFKSEGRI LPDGVNAKLL
201: GCHGRLANRA PGQAFLSAA

Best Arabidopsis Sequence Match ( AT1G26910.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPYCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD YTKLRQEKRI VPDGVNAKFL
201: SCHGPLANRQ PGSAFLSAGA Q

Arabidopsis Description

RPL10B60S ribosomal protein L10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q08770]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.