CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
nucleus 2
cytosol 2
endoplasmic reticulum 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

nucleus: 21132161
nucleus: 27291164
endoplasmic reticulum: 28499913
mitochondrion: 28499913
nucleus: 28499913

msms PMID: 21132161 doi

B Cooper, KB Campbell, J Feng, WM Garrett, R Frederick

Soybean Genomics and Improvement Laboratory, USDA-ARS, Beltsville, MD 20705, USA. bret.cooper@ars.usda.gov

msms PMID: 28499913 doi

S Komatsu, X Wang, X Yin, Y Nanjo, H Ohyanagi, K Sakata

Department of Life Science and Informatics, Maebashi Institute of Technology, Maebashi 371-0816, Japan. Electronic address: ksakata@maebashi-it.ac.jp., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan., Institute of Crop Science, National Agriculture and Food Research Organization, Tsukuba 305-8518, Japan; Faculty of Life and Environmental Sciences, University of Tsukuba, Tsukuba 305-8572, Japan. Electronic address: komatsu.setsuko.fu@u.tsukuba.ac.jp., King Abdullah University of Science and Technology (KAUST), Computational Bioscience Research Center (CBRC), Thuwal 23955-6900, Saudi Arabia.

msms PMID: 27291164 doi

X Yin, S Komatsu

Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan., National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan.

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH16949	Soybean	nucleus	99.55	99.55
KRH64232	Soybean	nucleus	95.95	95.52
KRH53698	Soybean	cytosol	95.95	95.52
PGSC0003DMT400078129	Potato	cytosol, mitochondrion	91.89	93.15
Solyc06g082670.2.1	Tomato	plastid	91.89	93.15
PGSC0003DMT400006183	Potato	cytosol	75.68	91.8
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	14.41	91.43
GSMUA_Achr10P...	Banana	cytosol	91.44	90.62
TraesCS1D01G114100.1	Wheat	cytosol, mitochondrion	88.74	89.95
TraesCS1A01G112500.1	Wheat	nucleus	88.74	89.95
TraesCS1B01G132700.1	Wheat	cytosol, mitochondrion	88.74	89.95
EER93866	Sorghum	cytosol	88.74	89.55
Zm00001d033128_P001	Maize	plasma membrane, plastid	88.29	89.09
TraesCS4A01G204800.1	Wheat	plastid	86.94	88.94
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	90.09	88.89
Solyc06g007520.2.1	Tomato	nucleus, unclear	91.44	88.65
TraesCS4B01G108400.1	Wheat	golgi, unclear	86.49	88.48
TraesCS4D01G105600.1	Wheat	cytosol, mitochondrion	86.04	88.02
EES06560	Sorghum	cytosol	88.29	87.5
GSMUA_Achr6P15860_001	Banana	mitochondrion	58.56	87.25
Os05t0169100-01	Rice	nucleus, plastid	86.04	87.21
Os11t0220800-01	Rice	nucleus	86.04	85.27
Solyc06g082650.2.1	Tomato	nucleus	77.03	83.01
KRG98102	Soybean	mitochondrion, plastid	94.14	79.47
KRH66434	Soybean	cytosol, mitochondrion, plastid	65.32	78.38
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	76.58	77.63
HORVU4Hr1G016190.4	Barley	extracellular, golgi	69.37	76.62
KRG88858	Soybean	cytosol	63.96	76.34
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	92.34	75.93
KRH65844	Soybean	cytosol	36.04	74.07
HORVU1Hr1G024710.4	Barley	mitochondrion	83.33	72.27
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	34.23	64.41

Protein Annotations

EntrezGene:100777196	MapMan:17.1.2.1.9	Gene3D:2.20.25.330	Gene3D:3.90.1170.10	UniProt:A0A0R4J2Q7	EMBL:ACUP02001221
EnsemblPlantsGene:GLYMA_02G220000	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152
GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	InterPro:IPR036920	EnsemblPlants:KRH72557	ProteinID:KRH72557
ProteinID:KRH72557.1	PFAM:PF00252	PIRSF:PIRSF005590	ScanProsite:PS01257	PANTHER:PTHR11726	PANTHER:PTHR11726:SF22
InterPro:Ribosomal_L10e	InterPro:Ribosomal_L10e/L16	InterPro:Ribosomal_L10e/L16_sf	InterPro:Ribosomal_L10e_CS	SUPFAM:SSF54686	TIGRFAMs:TIGR00279
UniParc:UPI00018C6BFA	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr2:-:40793905..40795758

Molecular Weight (calculated)

25065.7 Da

IEP (calculated)

11.027

GRAVY (calculated)

-0.496

Length

222 amino acids

Sequence
(BLAST)

001: MGRRPARCYR QIKNKPYPKS RFCRGVPDPK IRIYDVGMKK KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMAKFA GKDAFHLRVR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KPQGTCARVA IGQVLLSVRC KDSNSHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFSRSD YLKFKSENRI VPDGVNAKLL
201: GCHGPLANRE PGRAFLDTAT GS

Best Arabidopsis Sequence Match ( AT1G26910.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPYCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD YTKLRQEKRI VPDGVNAKFL
201: SCHGPLANRQ PGSAFLSAGA Q

Arabidopsis Description

RPL10B60S ribosomal protein L10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q08770]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.