Factsheet for Solyc06g082670.2.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 1
nucleus 2
cytosol 2
endoplasmic reticulum 1
mitochondrion 3

Predictors

GFP

MS/MS

Papers

plastid: 22908117
nucleus: 25464976
plastid: 26371478
unclear: 26455813

msms PMID: 22908117 doi

C Barsan, M Zouine, E Maza, W Bian, I Egea, M Rossignol, D Bouyssie, C Pichereaux, E Purgatto, M Bouzayen, A Latché, JC Pech

Université de Toulouse, Institut National Polytechnique-Ecole Nationale Supérieure Agronomique de Toulouse, Génomique et Biotechnologie des Fruits, Castanet-Tolosan F-31326, France.

msms PMID: 26371478 doi

M Suzuki, S Takahashi, T Kondo, H Dohra, Y Ito, Y Kiriiwa, M Hayashi, S Kamiya, M Kato, M Fujiwara, Y Fukao, M Kobayashi, N Nagata, R Motohashi

Faculty of Agriculture, Shizuoka University, Shizuoka city, Shizuoka, Japan., Faculty of Science, Japan Woman's University, Bunkyo-ku, Tokyo, Japan., Instrumental Research Support Office, Research Institute of Green Science and Technology, Shizuoka University, Shizuoka city, Shizuoka, Japan., The Plant Science Education Unit, Nara Institute of Science and Technology, Ikoma city, Nara, Japan.

msms PMID: 26455813 doi

P Paul, P Chaturvedi, M Selymesi, A Ghatak, A Mesihovic, KD Scharf, W Weckwerth, S Simm, E Schleiff

Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium., Goethe University, Department of Biosciences, Molecular Cell Biology of Plants, Frankfurt/Main, Germany; SPOT-ITN Consortium; Goethe University, Cluster of Excellence Frankfurt, Frankfurt/Main, Germany; Goethe University, Buchmann Institute of Molecular Life Sciences, Frankfurt/Main, Germany. Electronic address: schleiff@bio.uni-frankfurt.de., SPOT-ITN Consortium; University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria., University of Vienna, Department of Ecogenomics and Systems biology, Vienna, Austria; School of Biotechnology and Bioinformatics, D.Y. Patil University, Mumbai, India.

msms PMID: 25464976 doi

Y Wang, W Wang, J Cai, Y Zhang, G Qin, S Tian

PPI

Inferred distinct locusB in Crop

locusB	locations
Solyc07g008860.2.1

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT1G26910.1	Solyc07g008860.2.1	AT1G71840.1	21798944

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
PGSC0003DMT400078129	Potato	cytosol, mitochondrion	99.09	99.09
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	15.07	94.29
KRH64232	Soybean	nucleus	93.61	91.93
KRH53698	Soybean	cytosol	93.61	91.93
KRH72557	Soybean	nucleus	93.15	91.89
KRH16949	Soybean	nucleus	93.15	91.89
Solyc06g007520.2.1	Tomato	nucleus, unclear	95.89	91.7
EER93866	Sorghum	cytosol	90.87	90.45
Zm00001d033128_P001	Maize	plasma membrane, plastid	90.41	90.0
TraesCS1D01G114100.1	Wheat	cytosol, mitochondrion	89.95	89.95
TraesCS1B01G132700.1	Wheat	cytosol, mitochondrion	89.95	89.95
TraesCS1A01G112500.1	Wheat	nucleus	89.95	89.95
GSMUA_Achr10P...	Banana	cytosol	91.78	89.73
Os05t0169100-01	Rice	nucleus, plastid	88.58	88.58
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	90.87	88.44
TraesCS4A01G204800.1	Wheat	plastid	86.76	87.56
EES06560	Sorghum	cytosol	89.5	87.5
TraesCS4B01G108400.1	Wheat	golgi, unclear	86.3	87.1
TraesCS4D01G105600.1	Wheat	cytosol, mitochondrion	85.84	86.64
CDY44087	Canola	cytosol, mitochondrion	87.21	86.43
CDY28582	Canola	cytosol, mitochondrion	87.21	86.43
CDY38756	Canola	mitochondrion	86.76	86.36
CDY62060	Canola	mitochondrion	86.3	85.52
CDX96861	Canola	cytosol	85.84	85.45
AT1G26910.1	Thale cress	mitochondrion	85.84	85.07
CDX84036	Canola	cytosol, mitochondrion	85.39	85.0
AT1G14320.1	Thale cress	mitochondrion	85.39	85.0
CDY49095	Canola	mitochondrion	85.39	85.0
Os11t0220800-01	Rice	nucleus	86.76	84.82
AT1G66580.1	Thale cress	cytosol, mitochondrion	85.39	84.62
Solyc06g082650.2.1	Tomato	nucleus	79.45	84.47
CDX81630	Canola	cytosol	70.32	84.15
GSMUA_Achr6P15860_001	Banana	mitochondrion	57.08	83.89
CDY48394	Canola	cytosol	70.32	83.7
Bra003984.1-P	Field mustard	cytosol	70.32	83.7
Bra016706.1-P	Field mustard	cytosol	69.86	83.61
Bra007877.1-P	Field mustard	mitochondrion	42.92	78.33
Bra016269.1-P	Field mustard	mitochondrion	42.47	78.15
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	77.63	77.63
Bra026839.1-P	Field mustard	mitochondrion	42.01	77.31
CDY39324	Canola	cytosol, mitochondrion	85.39	76.95
HORVU4Hr1G016190.4	Barley	extracellular, golgi	70.32	76.62
Bra019662.1-P	Field mustard	mitochondrion	41.1	75.63
KRG98102	Soybean	mitochondrion, plastid	90.41	75.29
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	92.69	75.19
KRH66434	Soybean	cytosol, mitochondrion, plastid	63.47	75.14
CDY33756	Canola	cytosol	85.39	75.1
KRH65844	Soybean	cytosol	36.53	74.07
KRG88858	Soybean	cytosol	62.56	73.66
HORVU1Hr1G024710.4	Barley	mitochondrion	84.93	72.66
CDY01747	Canola	mitochondrion	86.76	71.7
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	33.79	62.71

Protein Annotations

MapMan:17.1.2.1.9	Gene3D:2.20.25.330	Gene3D:3.90.1170.10	GO:GO:0000027	GO:GO:0003674	GO:GO:0003676
GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043	GO:GO:0019538	GO:GO:0022625
InterPro:IPR036920	UniProt:K4CAC2	PFAM:PF00252	PIRSF:PIRSF005590	ScanProsite:PS01257	PANTHER:PTHR11726
PANTHER:PTHR11726:SF17	InterPro:Ribosomal_L10e	InterPro:Ribosomal_L10e/L16	InterPro:Ribosomal_L10e/L16_sf	InterPro:Ribosomal_L10e_CS	SUPFAM:SSF54686
EnsemblPlantsGene:Solyc06g082670.2	EnsemblPlants:Solyc06g082670.2.1	TIGRFAMs:TIGR00279	UniParc:UPI00027659CB	:	:

Description

No Description!

Coordinates

chr6:+:48422684..48425267

Molecular Weight (calculated)

24805.4 Da

IEP (calculated)

11.295

GRAVY (calculated)

-0.526

Length

219 amino acids

Sequence
(BLAST)

001: MGRRPARCYR QIKNKPYPKS RFCRGVPDPK IRIYDVGMKK KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMTKSA GKDAFHLRVR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KPQGVCARVA IGQVLLSVRC KDGNSNHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFSRTD YLRYKSENRI LPDGVNAKLL
201: GNHGRLAARQ PGRAFLTSA

Best Arabidopsis Sequence Match ( AT1G26910.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPYCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD YTKLRQEKRI VPDGVNAKFL
201: SCHGPLANRQ PGSAFLSAGA Q

Arabidopsis Description

RPL10B60S ribosomal protein L10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q08770]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.