CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 2
cytosol 2
mitochondrion 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY28582	Canola	cytosol, mitochondrion	100.0	100.0
Bra007877.1-P	Field mustard	mitochondrion	53.85	99.17
CDY62060	Canola	mitochondrion	99.09	99.09
CDY48394	Canola	cytosol	82.35	98.91
CDY38756	Canola	mitochondrion	97.74	98.18
AT1G66580.1	Thale cress	cytosol, mitochondrion	96.38	96.38
CDX84036	Canola	cytosol, mitochondrion	93.67	94.09
CDX96861	Canola	cytosol	93.67	94.09
CDX81630	Canola	cytosol	77.83	93.99
CDY49095	Canola	mitochondrion	93.21	93.64
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	14.48	91.43
Solyc06g082670.2.1	Tomato	plastid	86.43	87.21
EER93866	Sorghum	cytosol	86.43	86.82
Zm00001d033128_P001	Maize	plasma membrane, plastid	85.97	86.36
PGSC0003DMT400078129	Potato	cytosol, mitochondrion	85.52	86.3
CDY39324	Canola	cytosol, mitochondrion	94.12	85.6
TraesCS1D01G114100.1	Wheat	cytosol, mitochondrion	84.62	85.39
TraesCS1B01G132700.1	Wheat	cytosol, mitochondrion	84.62	85.39
TraesCS1A01G112500.1	Wheat	nucleus	84.62	85.39
TraesCS4A01G204800.1	Wheat	plastid	83.26	84.79
Os05t0169100-01	Rice	nucleus, plastid	83.71	84.47
TraesCS4B01G108400.1	Wheat	golgi, unclear	82.81	84.33
PGSC0003DMT400006183	Potato	cytosol	69.68	84.15
TraesCS4D01G105600.1	Wheat	cytosol, mitochondrion	82.35	83.87
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	85.07	83.56
GSMUA_Achr10P...	Banana	cytosol	84.62	83.48
CDY33756	Canola	cytosol	93.67	83.13
EES06560	Sorghum	cytosol	83.26	82.14
Os11t0220800-01	Rice	nucleus	82.81	81.7
Solyc06g007520.2.1	Tomato	nucleus, unclear	84.62	81.66
CDY01747	Canola	mitochondrion	97.74	81.51
Solyc06g082650.2.1	Tomato	nucleus	74.66	80.1
GSMUA_Achr6P15860_001	Banana	mitochondrion	51.13	75.84
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	74.66	75.34
HORVU4Hr1G016190.4	Barley	extracellular, golgi	68.33	75.12
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	86.88	71.11
KRG98102	Soybean	mitochondrion, plastid	84.62	71.1
HORVU1Hr1G024710.4	Barley	mitochondrion	80.09	69.14
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	29.86	55.93

Protein Annotations

MapMan:17.1.2.1.9	Gene3D:2.20.25.330	Gene3D:3.90.1170.10	GO:A0A078I201	UniProt:A0A078I201	ProteinID:CDY28582.1
EnsemblPlants:CDY44087	ProteinID:CDY44087	ProteinID:CDY44087.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412
GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00079516001
InterPro:IPR036920	PFAM:PF00252	PIRSF:PIRSF005590	ScanProsite:PS01257	PANTHER:PTHR11726	PANTHER:PTHR11726:SF17
InterPro:Ribosomal_L10e	InterPro:Ribosomal_L10e/L16	InterPro:Ribosomal_L10e/L16_sf	InterPro:Ribosomal_L10e_CS	SUPFAM:SSF54686	TIGRFAMs:TIGR00279
UniParc:UPI00018C6BDF	:	:	:	:	:

Description

BnaA02g14510DBnaA02g14510D protein [Source:UniProtKB/TrEMBL;Acc:A0A078I201]

Coordinates

chrLK032578:+:207472..208810

Molecular Weight (calculated)

24946.6 Da

IEP (calculated)

11.295

GRAVY (calculated)

-0.494

Length

221 amino acids

Sequence
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKK KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDNHGAHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD YTRLRQSKRI VPDGVNAKFL
201: SNHGRLANRQ PGSAFISATS D

Best Arabidopsis Sequence Match ( AT1G66580.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDNHGVHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAE YTKLRAMKRI VPDGVNAKFL
201: SNHGPLANRQ PGSAFISATS E

Arabidopsis Description

RPL10C60S ribosomal protein L10-3 [Source:UniProtKB/Swiss-Prot;Acc:Q93W22]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.