Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Bra026839.1-P | Field mustard | mitochondrion | 65.03 | 100.0 |
| CDY48394 | Canola | cytosol | 95.08 | 94.57 |
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion | 17.49 | 91.43 |
| PGSC0003DMT400006183 | Potato | cytosol | 85.25 | 85.25 |
| CDX96861 | Canola | cytosol | 98.91 | 82.27 |
| AT1G14320.1 | Thale cress | mitochondrion | 98.36 | 81.82 |
| CDX84036 | Canola | cytosol, mitochondrion | 98.36 | 81.82 |
| CDY49095 | Canola | mitochondrion | 97.81 | 81.36 |
| CDY62060 | Canola | mitochondrion | 95.08 | 78.73 |
| GSMUA_Achr6P15860_001 | Banana | mitochondrion | 63.39 | 77.85 |
| CDY28582 | Canola | cytosol, mitochondrion | 93.99 | 77.83 |
| CDY44087 | Canola | cytosol, mitochondrion | 93.99 | 77.83 |
| CDY38756 | Canola | mitochondrion | 93.44 | 77.73 |
| CDY39324 | Canola | cytosol, mitochondrion | 98.36 | 74.07 |
| CDY33756 | Canola | cytosol | 98.91 | 72.69 |
| Solyc06g082670.2.1 | Tomato | plastid | 84.15 | 70.32 |
| PGSC0003DMT400078129 | Potato | cytosol, mitochondrion | 84.15 | 70.32 |
| TraesCS4A01G204800.1 | Wheat | plastid | 81.97 | 69.12 |
| EER93866 | Sorghum | cytosol | 83.06 | 69.09 |
| GSMUA_Achr10P... | Banana | cytosol | 84.15 | 68.75 |
| TraesCS4B01G108400.1 | Wheat | golgi, unclear | 81.42 | 68.66 |
| Zm00001d033128_P001 | Maize | plasma membrane, plastid | 82.51 | 68.64 |
| Solyc06g007520.2.1 | Tomato | nucleus, unclear | 85.79 | 68.56 |
| TraesCS1D01G114100.1 | Wheat | cytosol, mitochondrion | 81.97 | 68.49 |
| TraesCS1A01G112500.1 | Wheat | nucleus | 81.97 | 68.49 |
| TraesCS1B01G132700.1 | Wheat | cytosol, mitochondrion | 81.97 | 68.49 |
| GSMUA_Achr8P01550_001 | Banana | cytosol, mitochondrion | 84.15 | 68.44 |
| TraesCS4D01G105600.1 | Wheat | cytosol, mitochondrion | 80.87 | 68.2 |
| EES06560 | Sorghum | cytosol | 81.97 | 66.96 |
| Os05t0169100-01 | Rice | nucleus, plastid | 79.78 | 66.67 |
| Os11t0220800-01 | Rice | nucleus | 80.33 | 65.62 |
| CDY01747 | Canola | mitochondrion | 93.44 | 64.53 |
| Solyc06g082650.2.1 | Tomato | nucleus | 71.58 | 63.59 |
| KRG98102 | Soybean | mitochondrion, plastid | 86.34 | 60.08 |
| VIT_06s0004g08260.t01 | Wine grape | cytosol, mitochondrion | 71.04 | 59.36 |
| VIT_01s0150g00580.t01 | Wine grape | endoplasmic reticulum | 86.89 | 58.89 |
| HORVU4Hr1G016190.4 | Barley | extracellular, golgi | 64.48 | 58.71 |
| HORVU1Hr1G024710.4 | Barley | mitochondrion | 77.6 | 55.47 |
| GSMUA_Achr6P08650_001 | Banana | endoplasmic reticulum, extracellular | 35.52 | 55.08 |
Protein Annotations
| MapMan:17.1.2.1.9 | Gene3D:2.20.25.330 | Gene3D:3.90.1170.10 | GO:A0A078CXT7 | EnsemblPlants:CDX81630 | ProteinID:CDX81630 |
| ProteinID:CDX81630.1 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 | GO:GO:0005575 | GO:GO:0005622 |
| GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 | GO:GO:0008150 | GO:GO:0008152 |
| GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSBRNA2T00136543001 | InterPro:IPR036920 | PFAM:PF00252 |
| PIRSF:PIRSF005590 | ScanProsite:PS01257 | PANTHER:PTHR11726 | PANTHER:PTHR11726:SF22 | InterPro:Ribosomal_L10e | InterPro:Ribosomal_L10e/L16 |
| InterPro:Ribosomal_L10e/L16_sf | InterPro:Ribosomal_L10e_CS | SUPFAM:SSF54686 | UniParc:UPI0004EE8F51 | : | : |
Description
BnaC08g39710D
Coordinates
chrLK031826:+:81486..82324
Molecular Weight (calculated)
20476.1 Da
IEP (calculated)
11.064
GRAVY (calculated)
-0.308
Length
183 amino acids
Sequence
(BLAST)
(BLAST)
001: MKKKGVDEFP FCVHLVSWEK ENVSSEALEA ARIACNKYMV KSAGKDAFHL RIRVHPFHVL RINKMLSCAG ADRLQTGMRG AFGKALGTCA RVAIGQVLLS
101: VRCKDGHGHH AQEALRRAKF KFPGRQKIIV SRKWGFTKFN RADFTKLRQE KRVVPDGVNA KFLSCHGPLA NRQPGSAFLP ATY
101: VRCKDGHGHH AQEALRRAKF KFPGRQKIIV SRKWGFTKFN RADFTKLRQE KRVVPDGVNA KFLSCHGPLA NRQPGSAFLP ATY
001: MKRKGVDEFP YCVHLVSWEK ENVSSEALEA ARIACNKYMV KSAGKDAFHL RIRVHPFHVL RINKMLSCAG ADRLQTGMRG AFGKALGTCA RVAIGQVLLS
101: VRCKDAHGHH AQEALRRAKF KFPGRQKIIV SRKWGFTKFN RADYTKLRQE KRIVPDGVNA KFLSCHGPLA NRQPGSAFLS AGAQ
101: VRCKDAHGHH AQEALRRAKF KFPGRQKIIV SRKWGFTKFN RADYTKLRQE KRIVPDGVNA KFLSCHGPLA NRQPGSAFLS AGAQ
Arabidopsis Description
RPL10B60S ribosomal protein L10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q08770]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.