CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

plastid 1
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra016269.1-P	Field mustard	mitochondrion	53.64	99.16
CDY28582	Canola	cytosol, mitochondrion	98.18	97.74
CDY62060	Canola	mitochondrion	98.18	97.74
CDY44087	Canola	cytosol, mitochondrion	98.18	97.74
CDY48394	Canola	cytosol	81.36	97.28
AT1G66580.1	Thale cress	cytosol, mitochondrion	95.91	95.48
CDX84036	Canola	cytosol, mitochondrion	93.64	93.64
CDX96861	Canola	cytosol	93.64	93.64
CDY49095	Canola	mitochondrion	93.64	93.64
CDX81630	Canola	cytosol	77.73	93.44
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	14.55	91.43
EER93866	Sorghum	cytosol	86.82	86.82
Solyc06g082670.2.1	Tomato	plastid	86.36	86.76
Zm00001d033128_P001	Maize	plasma membrane, plastid	86.36	86.36
PGSC0003DMT400078129	Potato	cytosol, mitochondrion	85.45	85.84
TraesCS4A01G204800.1	Wheat	plastid	84.55	85.71
CDY39324	Canola	cytosol, mitochondrion	94.55	85.6
TraesCS4B01G108400.1	Wheat	golgi, unclear	84.09	85.25
TraesCS4D01G105600.1	Wheat	cytosol, mitochondrion	83.64	84.79
TraesCS1D01G114100.1	Wheat	cytosol, mitochondrion	84.09	84.47
TraesCS1B01G132700.1	Wheat	cytosol, mitochondrion	84.09	84.47
TraesCS1A01G112500.1	Wheat	nucleus	84.09	84.47
GSMUA_Achr10P...	Banana	cytosol	85.45	83.93
PGSC0003DMT400006183	Potato	cytosol	69.55	83.61
Os05t0169100-01	Rice	nucleus, plastid	83.18	83.56
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	85.45	83.56
EES06560	Sorghum	cytosol	84.55	83.04
CDY01747	Canola	mitochondrion	100.0	83.02
CDY33756	Canola	cytosol	93.64	82.73
Os11t0220800-01	Rice	nucleus	82.73	81.25
Solyc06g007520.2.1	Tomato	nucleus, unclear	84.55	81.22
Solyc06g082650.2.1	Tomato	nucleus	74.09	79.13
GSMUA_Achr6P15860_001	Banana	mitochondrion	50.91	75.17
HORVU4Hr1G016190.4	Barley	extracellular, golgi	68.64	75.12
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	74.09	74.43
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	87.73	71.48
KRG98102	Soybean	mitochondrion, plastid	84.55	70.72
HORVU1Hr1G024710.4	Barley	mitochondrion	80.45	69.14
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	30.0	55.93

Protein Annotations

MapMan:17.1.2.1.9	Gene3D:2.20.25.330	Gene3D:3.90.1170.10	GO:A0A078HMC1	UniProt:A0A078HMC1	EnsemblPlants:CDY38756
ProteinID:CDY38756	ProteinID:CDY38756.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00066548001	InterPro:IPR036920
PFAM:PF00252	PIRSF:PIRSF005590	ScanProsite:PS01257	PANTHER:PTHR11726	PANTHER:PTHR11726:SF17	InterPro:Ribosomal_L10e
InterPro:Ribosomal_L10e/L16	InterPro:Ribosomal_L10e/L16_sf	InterPro:Ribosomal_L10e_CS	SUPFAM:SSF54686	TIGRFAMs:TIGR00279	UniParc:UPI00018C6BE1

Description

BnaA07g28280DBnaA07g28280D protein [Source:UniProtKB/TrEMBL;Acc:A0A078HMC1]

Coordinates

chrLK032432:+:8577..9734

Molecular Weight (calculated)

24846.5 Da

IEP (calculated)

11.242

GRAVY (calculated)

-0.490

Length

220 amino acids

Sequence
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKK KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDNHGAHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD YTRMRQSKRI VPDGVNAKFL
201: SNHGPLAKRQ PGSAFISATE

Best Arabidopsis Sequence Match ( AT1G66580.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDNHGVHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAE YTKLRAMKRI VPDGVNAKFL
201: SNHGPLANRQ PGSAFISATS E

Arabidopsis Description

RPL10C60S ribosomal protein L10-3 [Source:UniProtKB/Swiss-Prot;Acc:Q93W22]
SUBAcon: [mitochondrion,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.