CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 1
cytosol 2
mitochondrion 4

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019662.1-P	Field mustard	mitochondrion	54.09	100.0
CDX84036	Canola	cytosol, mitochondrion	99.55	99.55
CDX96861	Canola	cytosol	99.09	99.09
CDX81630	Canola	cytosol	81.36	97.81
AT1G14320.1	Thale cress	mitochondrion	97.73	97.73
CDY62060	Canola	mitochondrion	94.55	94.12
CDY38756	Canola	mitochondrion	93.64	93.64
CDY28582	Canola	cytosol, mitochondrion	93.64	93.21
CDY44087	Canola	cytosol, mitochondrion	93.64	93.21
CDY48394	Canola	cytosol	77.73	92.93
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	14.55	91.43
CDY39324	Canola	cytosol, mitochondrion	98.64	89.3
CDY33756	Canola	cytosol	97.27	85.94
Solyc06g082670.2.1	Tomato	plastid	85.0	85.39
PGSC0003DMT400078129	Potato	cytosol, mitochondrion	85.0	85.39
TraesCS4A01G204800.1	Wheat	plastid	84.09	85.25
EER93866	Sorghum	cytosol	85.0	85.0
TraesCS4B01G108400.1	Wheat	golgi, unclear	83.64	84.79
Zm00001d033128_P001	Maize	plasma membrane, plastid	84.55	84.55
GSMUA_Achr10P...	Banana	cytosol	85.91	84.38
TraesCS4D01G105600.1	Wheat	cytosol, mitochondrion	83.18	84.33
PGSC0003DMT400006183	Potato	cytosol	70.0	84.15
TraesCS1A01G112500.1	Wheat	nucleus	83.64	84.02
TraesCS1B01G132700.1	Wheat	cytosol, mitochondrion	83.64	84.02
TraesCS1D01G114100.1	Wheat	cytosol, mitochondrion	83.64	84.02
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	85.91	84.0
Os05t0169100-01	Rice	nucleus, plastid	82.27	82.65
EES06560	Sorghum	cytosol	84.09	82.59
Solyc06g007520.2.1	Tomato	nucleus, unclear	85.0	81.66
Os11t0220800-01	Rice	nucleus	82.73	81.25
Solyc06g082650.2.1	Tomato	nucleus	74.09	79.13
CDY01747	Canola	mitochondrion	93.64	77.74
GSMUA_Achr6P15860_001	Banana	mitochondrion	51.82	76.51
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	75.0	75.34
HORVU4Hr1G016190.4	Barley	extracellular, golgi	68.64	75.12
KRG98102	Soybean	mitochondrion, plastid	86.82	72.62
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	87.73	71.48
HORVU1Hr1G024710.4	Barley	mitochondrion	80.45	69.14
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	30.0	55.93

Protein Annotations

MapMan:17.1.2.1.9	Gene3D:2.20.25.330	Gene3D:3.90.1170.10	GO:A0A078IE34	UniProt:A0A078IE34	EnsemblPlants:CDY49095
ProteinID:CDY49095	ProteinID:CDY49095.1	GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150
GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0019538	EnsemblPlantsGene:GSBRNA2T00092327001	InterPro:IPR036920
PFAM:PF00252	PIRSF:PIRSF005590	ScanProsite:PS01257	PANTHER:PTHR11726	PANTHER:PTHR11726:SF22	InterPro:Ribosomal_L10e
InterPro:Ribosomal_L10e/L16	InterPro:Ribosomal_L10e/L16_sf	InterPro:Ribosomal_L10e_CS	SUPFAM:SSF54686	TIGRFAMs:TIGR00279	UniParc:UPI0004EE9BDB

Description

BnaA06g09110DBnaA06g09110D protein [Source:UniProtKB/TrEMBL;Acc:A0A078IE34]

Coordinates

chrLK032810:-:54429..55677

Molecular Weight (calculated)

24901.7 Da

IEP (calculated)

11.102

GRAVY (calculated)

-0.411

Length

220 amino acids

Sequence
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKK KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD FTKLRQEKRV VPDGVNAKFF
201: SCHGPLALRQ PGTAFLPATY

Best Arabidopsis Sequence Match ( AT1G14320.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD FTKLRQEKRV VPDGVNAKFL
201: SCHGPLANRQ PGSAFLPAHY

Arabidopsis Description

RPL10A60S ribosomal protein L10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VT9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.