Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion
Predictor Summary:
Predictor Summary:
- nucleus 3
- mitochondrion 5
- endoplasmic reticulum 1
- plastid 1
- cytosol 1
PPI
Inferred distinct locusB in Crop
| locusB | locations |
|---|---|
| GSMUA_Achr11P... |
Inferred from Arabidopsis experimental PPI
| Ath locusA | locusB | Ath locusB | Paper |
|---|---|---|---|
| AT1G26910.1 | GSMUA_Achr11P... | AT1G71840.1 | 21798944 |
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| GSMUA_AchrUn_... | Banana | cytosol, mitochondrion | 22.15 | 94.29 |
| Bra026839.1-P | Field mustard | mitochondrion | 62.42 | 78.15 |
| Bra019662.1-P | Field mustard | mitochondrion | 61.07 | 76.47 |
| Bra007877.1-P | Field mustard | mitochondrion | 60.4 | 75.0 |
| Bra016269.1-P | Field mustard | mitochondrion | 59.73 | 74.79 |
| PGSC0003DMT400006183 | Potato | cytosol | 85.23 | 69.4 |
| GSMUA_Achr6P08650_001 | Banana | endoplasmic reticulum, extracellular | 53.02 | 66.95 |
| CDX81630 | Canola | cytosol | 77.85 | 63.39 |
| Bra016706.1-P | Field mustard | cytosol | 77.18 | 62.84 |
| GSMUA_Achr10P... | Banana | cytosol | 92.62 | 61.61 |
| Bra003984.1-P | Field mustard | cytosol | 75.84 | 61.41 |
| CDY48394 | Canola | cytosol | 75.84 | 61.41 |
| KRH16949 | Soybean | nucleus | 87.92 | 59.01 |
| KRH72557 | Soybean | nucleus | 87.25 | 58.56 |
| KRH64232 | Soybean | nucleus | 86.58 | 57.85 |
| KRH53698 | Soybean | cytosol | 86.58 | 57.85 |
| PGSC0003DMT400078129 | Potato | cytosol, mitochondrion | 84.56 | 57.53 |
| GSMUA_Achr8P01550_001 | Banana | cytosol, mitochondrion | 86.58 | 57.33 |
| Solyc06g082670.2.1 | Tomato | plastid | 83.89 | 57.08 |
| Zm00001d033128_P001 | Maize | plasma membrane, plastid | 82.55 | 55.91 |
| EER93866 | Sorghum | cytosol | 82.55 | 55.91 |
| TraesCS1D01G114100.1 | Wheat | cytosol, mitochondrion | 81.88 | 55.71 |
| TraesCS1B01G132700.1 | Wheat | cytosol, mitochondrion | 81.88 | 55.71 |
| TraesCS1A01G112500.1 | Wheat | nucleus | 81.88 | 55.71 |
| Solyc06g007520.2.1 | Tomato | nucleus, unclear | 85.23 | 55.46 |
| TraesCS4A01G204800.1 | Wheat | plastid | 79.87 | 54.84 |
| EES06560 | Sorghum | cytosol | 81.88 | 54.46 |
| TraesCS4B01G108400.1 | Wheat | golgi, unclear | 79.19 | 54.38 |
| Os05t0169100-01 | Rice | nucleus, plastid | 79.87 | 54.34 |
| TraesCS4D01G105600.1 | Wheat | cytosol, mitochondrion | 78.52 | 53.92 |
| AT1G26910.1 | Thale cress | mitochondrion | 78.52 | 52.94 |
| AT1G14320.1 | Thale cress | mitochondrion | 77.85 | 52.73 |
| CDX96861 | Canola | cytosol | 77.18 | 52.27 |
| CDX84036 | Canola | cytosol, mitochondrion | 77.18 | 52.27 |
| CDY49095 | Canola | mitochondrion | 76.51 | 51.82 |
| Os11t0220800-01 | Rice | nucleus | 77.85 | 51.79 |
| AT1G66580.1 | Thale cress | cytosol, mitochondrion | 76.51 | 51.58 |
| CDY28582 | Canola | cytosol, mitochondrion | 75.84 | 51.13 |
| CDY44087 | Canola | cytosol, mitochondrion | 75.84 | 51.13 |
| CDY62060 | Canola | mitochondrion | 75.84 | 51.13 |
| CDY38756 | Canola | mitochondrion | 75.17 | 50.91 |
| KRG98102 | Soybean | mitochondrion, plastid | 86.58 | 49.05 |
| KRG88858 | Soybean | cytosol | 61.07 | 48.92 |
| VIT_01s0150g00580.t01 | Wine grape | endoplasmic reticulum | 86.58 | 47.78 |
| KRH66434 | Soybean | cytosol, mitochondrion, plastid | 58.39 | 47.03 |
| CDY39324 | Canola | cytosol, mitochondrion | 76.51 | 46.91 |
| CDY33756 | Canola | cytosol | 77.18 | 46.18 |
| Solyc06g082650.2.1 | Tomato | nucleus | 61.74 | 44.66 |
| HORVU4Hr1G016190.4 | Barley | extracellular, golgi | 59.73 | 44.28 |
| VIT_06s0004g08260.t01 | Wine grape | cytosol, mitochondrion | 63.76 | 43.38 |
| HORVU1Hr1G024710.4 | Barley | mitochondrion | 73.15 | 42.58 |
| CDY01747 | Canola | mitochondrion | 75.17 | 42.26 |
| KRH65844 | Soybean | cytosol | 16.11 | 22.22 |
Protein Annotations
| MapMan:17.1.2.1.9 | Gene3D:2.20.25.330 | Gene3D:3.90.1170.10 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | EnsemblPlantsGene:GSMUA_Achr6G15860_001 |
| EnsemblPlants:GSMUA_Achr6P15860_001 | EnsemblPlants:GSMUA_Achr6T15860_001 | InterPro:IPR036920 | UniProt:M0T7D4 | PFAM:PF00252 | PIRSF:PIRSF005590 |
| ScanProsite:PS01257 | PANTHER:PTHR11726 | PANTHER:PTHR11726:SF22 | InterPro:Ribosomal_L10e | InterPro:Ribosomal_L10e/L16 | InterPro:Ribosomal_L10e/L16_sf |
| InterPro:Ribosomal_L10e_CS | SUPFAM:SSF54686 | UniParc:UPI000294DBD5 | : | : | : |
Description
60S ribosomal protein L10 [Source:GMGC_GENE;Acc:GSMUA_Achr6G15860_001]
Coordinates
chr6:+:10606345..10608189
Molecular Weight (calculated)
16523.3 Da
IEP (calculated)
11.760
GRAVY (calculated)
-0.380
Length
149 amino acids
Sequence
(BLAST)
(BLAST)
001: MTKFAGKDAF HLRVRVHPFH VLRINKMLSC AGADRLQTGM RGAFGKPQGT CARVSIGQVL LSVRCKDSNS NNAQEALRRA KFKFPGRQKI IISGKWGFTK
101: FSRADYLKWK SENRIIPDGV NAKLLGCHGP VANRRPGRAF LPAPMAESS
101: FSRADYLKWK SENRIIPDGV NAKLLGCHGP VANRRPGRAF LPAPMAESS
001: MKRKGVDEFP YCVHLVSWEK ENVSSEALEA ARIACNKYMV KSAGKDAFHL RIRVHPFHVL RINKMLSCAG ADRLQTGMRG AFGKALGTCA RVAIGQVLLS
101: VRCKDAHGHH AQEALRRAKF KFPGRQKIIV SRKWGFTKFN RADYTKLRQE KRIVPDGVNA KFLSCHGPLA NRQPGSAFLS AGAQ
101: VRCKDAHGHH AQEALRRAKF KFPGRQKIIV SRKWGFTKFN RADYTKLRQE KRIVPDGVNA KFLSCHGPLA NRQPGSAFLS AGAQ
Arabidopsis Description
RPL10B60S ribosomal protein L10-2 [Source:UniProtKB/Swiss-Prot;Acc:Q08770]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.