Factsheet for Bra016706.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
endoplasmic reticulum 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Bra019662.1-P	Field mustard	mitochondrion	63.93	98.32
Bra026839.1-P	Field mustard	mitochondrion	63.93	98.32
Bra003984.1-P	Field mustard	cytosol	93.99	93.48
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	17.49	91.43
Bra007877.1-P	Field mustard	mitochondrion	57.38	87.5
Bra016269.1-P	Field mustard	mitochondrion	56.83	87.39
PGSC0003DMT400006183	Potato	cytosol	84.7	84.7
CDX96861	Canola	cytosol	100.0	83.18
AT1G14320.1	Thale cress	mitochondrion	97.27	80.91
GSMUA_Achr6P15860_001	Banana	mitochondrion	62.84	77.18
Solyc06g082670.2.1	Tomato	plastid	83.61	69.86
PGSC0003DMT400078129	Potato	cytosol, mitochondrion	83.61	69.86
TraesCS4A01G204800.1	Wheat	plastid	81.42	68.66
EER93866	Sorghum	cytosol	82.51	68.64
GSMUA_Achr10P...	Banana	cytosol	83.61	68.3
TraesCS4B01G108400.1	Wheat	golgi, unclear	80.87	68.2
Zm00001d033128_P001	Maize	plasma membrane, plastid	81.97	68.18
Solyc06g007520.2.1	Tomato	nucleus, unclear	85.25	68.12
TraesCS1A01G112500.1	Wheat	nucleus	81.42	68.04
TraesCS1B01G132700.1	Wheat	cytosol, mitochondrion	81.42	68.04
TraesCS1D01G114100.1	Wheat	cytosol, mitochondrion	81.42	68.04
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	83.61	68.0
TraesCS4D01G105600.1	Wheat	cytosol, mitochondrion	80.33	67.74
EES06560	Sorghum	cytosol	81.42	66.52
Os05t0169100-01	Rice	nucleus, plastid	79.23	66.21
Os11t0220800-01	Rice	nucleus	79.78	65.18
Solyc06g082650.2.1	Tomato	nucleus	71.04	63.11
KRG98102	Soybean	mitochondrion, plastid	85.79	59.7
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	71.04	59.36
HORVU4Hr1G016190.4	Barley	extracellular, golgi	64.48	58.71
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	86.34	58.52
HORVU1Hr1G024710.4	Barley	mitochondrion	77.05	55.08
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	34.97	54.24

Protein Annotations

MapMan:17.1.2.1.9	Gene3D:2.20.25.330	Gene3D:3.90.1170.10	EnsemblPlantsGene:Bra016706	EnsemblPlants:Bra016706.1	EnsemblPlants:Bra016706.1-P
GO:GO:0003674	GO:GO:0003735	GO:GO:0005198	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005840	GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058
GO:GO:0009987	GO:GO:0019538	InterPro:IPR036920	UniProt:M4DJM8	PFAM:PF00252	PIRSF:PIRSF005590
ScanProsite:PS01257	PANTHER:PTHR11726	PANTHER:PTHR11726:SF22	InterPro:Ribosomal_L10e	InterPro:Ribosomal_L10e/L16	InterPro:Ribosomal_L10e/L16_sf
InterPro:Ribosomal_L10e_CS	SUPFAM:SSF54686	UniParc:UPI0002545C78	:	:	:

Description

AT1G14320 (E=8e-103) SAC52 | SAC52 (SUPPRESSOR OF ACAULIS 52); structural constituent of ribosome

Coordinates

chrA08:-:19620972..19621702

Molecular Weight (calculated)

20524.2 Da

IEP (calculated)

11.064

GRAVY (calculated)

-0.313

Length

183 amino acids

Sequence
(BLAST)

001: MKKKGVDEFP FCVHLVSWEK ENVSSEALEA ARIACNKYMV KSAGKDAFHL RIRVHPFHVL RINKMLSCAG ADRLQTGMRG AFGKALGTCA RVAIGQVLLS
101: VRCKDGHGHH AQEALRRAKF KFPGRQKIIV SRKWGFTKFN RADFTKLRQE KRVVPDGVNA KFFSCHGPLA NRQPGTAFLP ATY

Best Arabidopsis Sequence Match ( AT1G14320.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD FTKLRQEKRV VPDGVNAKFL
201: SCHGPLANRQ PGSAFLPAHY

Arabidopsis Description

RPL10A60S ribosomal protein L10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VT9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.