CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, plastid, cytosol

Predictor Summary:

nucleus 2
mitochondrion 2
plastid 2
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH64232	Soybean	nucleus	79.46	65.92
KRH53698	Soybean	cytosol	79.46	65.92
KRH72557	Soybean	nucleus	78.38	65.32
KRH16949	Soybean	nucleus	78.38	65.32
PGSC0003DMT400078129	Potato	cytosol, mitochondrion	75.14	63.47
Solyc06g082670.2.1	Tomato	plastid	75.14	63.47
KRH65844	Soybean	cytosol	36.76	62.96
GSMUA_AchrUn_...	Banana	cytosol, mitochondrion	11.89	62.86
GSMUA_Achr10P...	Banana	cytosol	75.14	62.05
TraesCS1A01G112500.1	Wheat	nucleus	72.97	61.64
TraesCS1B01G132700.1	Wheat	cytosol, mitochondrion	72.97	61.64
TraesCS1D01G114100.1	Wheat	cytosol, mitochondrion	72.97	61.64
GSMUA_Achr8P01550_001	Banana	cytosol, mitochondrion	74.59	61.33
Solyc06g007520.2.1	Tomato	nucleus, unclear	75.14	60.7
EER93866	Sorghum	cytosol	71.35	60.0
TraesCS4A01G204800.1	Wheat	plastid	70.27	59.91
TraesCS4B01G108400.1	Wheat	golgi, unclear	70.27	59.91
TraesCS4D01G105600.1	Wheat	cytosol, mitochondrion	70.27	59.91
Os05t0169100-01	Rice	nucleus, plastid	70.81	59.82
Zm00001d033128_P001	Maize	plasma membrane, plastid	70.81	59.55
EES06560	Sorghum	cytosol	71.35	58.93
KRG88858	Soybean	cytosol	58.92	58.6
PGSC0003DMT400006183	Potato	cytosol	57.84	58.47
GSMUA_Achr6P15860_001	Banana	mitochondrion	47.03	58.39
Os11t0220800-01	Rice	nucleus	69.73	57.59
Solyc06g082650.2.1	Tomato	nucleus	62.7	56.31
KRG98102	Soybean	mitochondrion, plastid	75.68	53.23
VIT_06s0004g08260.t01	Wine grape	cytosol, mitochondrion	62.16	52.51
VIT_01s0150g00580.t01	Wine grape	endoplasmic reticulum	75.68	51.85
HORVU4Hr1G016190.4	Barley	extracellular, golgi	55.68	51.24
HORVU1Hr1G024710.4	Barley	mitochondrion	66.49	48.05
GSMUA_Achr6P08650_001	Banana	endoplasmic reticulum, extracellular	25.41	39.83

Protein Annotations

Gene3D:2.20.25.330	Gene3D:3.90.1170.10	MapMan:35.1	EMBL:ACUP02001961	EnsemblPlantsGene:GLYMA_03G106300	GO:GO:0000027
GO:GO:0003674	GO:GO:0003676	GO:GO:0003723	GO:GO:0003735	GO:GO:0005198	GO:GO:0005488
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0005840
GO:GO:0006412	GO:GO:0008150	GO:GO:0008152	GO:GO:0009058	GO:GO:0009987	GO:GO:0016043
GO:GO:0019538	GO:GO:0022625	InterPro:IPR036920	UniProt:K7KEA0	EnsemblPlants:KRH66434	ProteinID:KRH66434
ProteinID:KRH66434.1	PFAM:PF00252	PANTHER:PTHR11726	PANTHER:PTHR11726:SF22	InterPro:Ribosomal_L10e	InterPro:Ribosomal_L10e/L16
InterPro:Ribosomal_L10e/L16_sf	SUPFAM:SSF54686	UniParc:UPI00029678E9	SEG:seg	:	:

Description

hypothetical protein

Coordinates

chr3:+:30463799..30466711

Molecular Weight (calculated)

20843.9 Da

IEP (calculated)

9.861

GRAVY (calculated)

-0.104

Length

185 amino acids

Sequence
(BLAST)

001: MGVGPARCCR QIKNKPYQKS RFCHGVPDPK IRIYDVGMKK KGVDEFPFCV HLVSWEKDAF HLRVRLHHFH VLRINKMLSC ARADTLQTGM RGEFGKPLGT
101: CATVAIGQVL LSVRRMDCNS HHAQEALIEL NLHLFLLCMF GLNDFLKLKS EYRIMPDGVN AKLLGCHGPL ANCQPGRAFL SRATA

Best Arabidopsis Sequence Match ( AT1G14320.1 )
(BLAST)

001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD FTKLRQEKRV VPDGVNAKFL
201: SCHGPLANRQ PGSAFLPAHY

Arabidopsis Description

RPL10A60S ribosomal protein L10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VT9]
SUBAcon: [mitochondrion]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.