Subcellular Localization
min:
: max
Winner_takes_all: mitochondrion, cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 3
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| TraesCS4B01G171600.1 | Wheat | cytosol, mitochondrion | 95.54 | 95.54 |
| TraesCS1D01G114100.1 | Wheat | cytosol, mitochondrion | 77.68 | 79.45 |
| TraesCS4D01G105600.1 | Wheat | cytosol, mitochondrion | 76.79 | 79.26 |
| Os03t0332500-00 | Rice | cytosol | 80.8 | 76.37 |
| KXG39441 | Sorghum | mitochondrion | 88.39 | 60.92 |
Protein Annotations
| MapMan:17.1.2.1.9 | Gene3D:2.20.25.330 | Gene3D:3.90.1170.10 | GO:GO:0003674 | GO:GO:0003735 | GO:GO:0005198 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005840 | GO:GO:0006412 |
| GO:GO:0008150 | GO:GO:0008152 | GO:GO:0009058 | GO:GO:0009987 | GO:GO:0019538 | InterPro:IPR036920 |
| PFAM:PF00252 | PIRSF:PIRSF005590 | ScanProsite:PS01257 | PANTHER:PTHR11726 | PANTHER:PTHR11726:SF13 | InterPro:Ribosomal_L10e |
| InterPro:Ribosomal_L10e/L16 | InterPro:Ribosomal_L10e/L16_sf | InterPro:Ribosomal_L10e_CS | SUPFAM:SSF54686 | TIGRFAMs:TIGR00279 | EnsemblPlantsGene:TraesCS4D01G173700 |
| EnsemblPlants:TraesCS4D01G173700.1 | TIGR:cd01433 | : | : | : | : |
Description
No Description!
Coordinates
chr4D:+:301534657..301535829
Molecular Weight (calculated)
25259.0 Da
IEP (calculated)
11.266
GRAVY (calculated)
-0.512
Length
224 amino acids
Sequence
(BLAST)
(BLAST)
001: MGRRPARCYR QIKNKPYPKS RYCRGVPDAK IRIFDVGQKK RGVDEFPLCV HLVSWEKENV TSEALEAARI ACNKYIAKHA GKDAFHLRVR AHPYHVLRIN
101: KMLSCAGADR LQTGMRGAFG KPTGMCARVH IGQVLLSVRC RDAQAAHAQE ALRRAKFKFP GRQRVIVSGK WGFTKFKREE YLKLRREGRI VPDGVNAKLL
201: TWHGSLEGRP RGKGVFPPSV AGSA
101: KMLSCAGADR LQTGMRGAFG KPTGMCARVH IGQVLLSVRC RDAQAAHAQE ALRRAKFKFP GRQRVIVSGK WGFTKFKREE YLKLRREGRI VPDGVNAKLL
201: TWHGSLEGRP RGKGVFPPSV AGSA
001: MGRRPARCYR QIKGKPYPKS RYCRGVPDPK IRIYDVGMKR KGVDEFPFCV HLVSWEKENV SSEALEAARI ACNKYMVKSA GKDAFHLRIR VHPFHVLRIN
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD FTKLRQEKRV VPDGVNAKFL
201: SCHGPLANRQ PGSAFLPAHY
101: KMLSCAGADR LQTGMRGAFG KALGTCARVA IGQVLLSVRC KDAHGHHAQE ALRRAKFKFP GRQKIIVSRK WGFTKFNRAD FTKLRQEKRV VPDGVNAKFL
201: SCHGPLANRQ PGSAFLPAHY
Arabidopsis Description
RPL10A60S ribosomal protein L10-1 [Source:UniProtKB/Swiss-Prot;Acc:Q93VT9]
SUBAcon: [mitochondrion]
SUBAcon: [mitochondrion]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.