Factsheet for Os03t0685600-01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	83.25	82.41
TraesCS2A01G126700.2	Wheat	cytoskeleton, cytosol, nucleus	80.2	79.6
TraesCS2D01G129200.1	Wheat	cytoskeleton, cytosol, nucleus	79.95	79.55
Zm00001d041945_P003	Maize	cytosol	82.23	76.24
TraesCS1B01G374800.1	Wheat	cytosol	73.35	73.35
HORVU3Hr1G013230.4	Barley	cytosol	74.11	73.0
TraesCS1D01G363000.1	Wheat	cytosol	72.84	72.84
TraesCS1A01G358200.1	Wheat	cytoskeleton, cytosol, nucleus	40.36	72.27
GSMUA_Achr11P...	Banana	cytosol	58.63	66.96
TraesCS2B01G148600.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	80.2	65.15
Zm00001d011779_P005	Maize	cytosol	80.96	65.1
HORVU2Hr1G022250.4	Barley	mitochondrion	81.47	64.72
VIT_18s0164g00020.t01	Wine grape	nucleus	57.87	58.31
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	58.63	58.19
VIT_11s0016g02220.t01	Wine grape	cytosol	57.87	58.02
PGSC0003DMT400073944	Potato	cytoskeleton, cytosol, nucleus	58.12	57.68
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	56.35	56.78
AT1G71840.1	Thale cress	nucleus	55.08	53.32
CDX68298	Canola	cytosol	51.52	52.19
CDX72834	Canola	cytosol	52.54	52.01
CDY36678	Canola	cytosol	51.02	51.67
CDX96351	Canola	cytosol	52.03	51.38
Bra016111.1-P	Field mustard	cytosol	52.03	51.38
Bra003910.1-P	Field mustard	cytosol	48.73	50.79
KRH37298	Soybean	cytosol	48.22	50.13
KRH35009	Soybean	cytosol	17.51	50.0
HORVU5Hr1G075920.16	Barley	nucleus	51.02	27.35
Os03t0725400-02	Rice	cytosol	20.3	24.69
Os06t0653800-01	Rice	nucleus	21.07	24.2
Os07t0572000-01	Rice	plastid	16.75	19.53
Os10t0104500-01	Rice	cytosol	23.35	19.17
Os11t0594200-01	Rice	cytosol	23.1	18.96
Os02t0543400-01	Rice	cytosol, mitochondrion	14.47	18.94
Os03t0339100-01	Rice	nucleus	19.04	15.89
Os03t0746600-01	Rice	nucleus	15.99	12.33
Os01t0780400-02	Rice	cytosol	18.02	8.47
Os10t0494800-01	Rice	cytosol	17.51	7.89
Os04t0677700-00	Rice	cytosol	15.99	7.08
Os01t0531300-00	Rice	endoplasmic reticulum, extracellular	1.02	1.8
Os01t0951000-02	Rice	cytosol, mitochondrion, nucleus	0.25	0.35

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EntrezGene:4333750	ProteinID:ABF98254.1	EMBL:AK111863	ProteinID:BAF12841.1
ProteinID:BAS85798.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575
GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005829	GO:GO:0008150	GO:GO:0030687
GO:GO:0042273	GO:GO:0051082	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os03g0685600
EnsemblPlants:Os03t0685600-01	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19857	PANTHER:PTHR19857:SF8	UniProt:Q10F11	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SUPFAM:SSF50998
UniParc:UPI0000DB4E8B	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	RefSeq:XP_015628255.1
SEG:seg	:	:	:	:	:

Description

OsWD40-82WD40 repeat-like domain containing protein. (Os03t0685600-01)

Coordinates

chr3:-:27347249..27351216

Molecular Weight (calculated)

42040.3 Da

IEP (calculated)

4.084

GRAVY (calculated)

-0.183

Length

394 amino acids

Sequence
(BLAST)

001: MSISGEVPAG EGSDGEEVFI NEEDIIHEIP IDEEDLPDRD DDEDDDGMGD MQEDDSQYAF RAHTDEIFAV ACSPTDASLV ASGGKDDRGF LWKIGSAEDV
101: LELAGHTDTV CTVAFSSDGN LLASGSFDGR INVWNTATRT LQGTLEGSGS GFEWLKWHPR GHLIIAGSED CNLWMWNADH NAILNTFAGH SSTVTCGDFT
201: PDGKLICTGS DDASLRIWDP RTAQSRHVVR GHGYHTDGLT CLSVTSDSQT IVSGSKDNSV CVVNINSGQV VGSLDGHTGS IECVGISPSY NWVATGSMDQ
301: KLIIWDLGRQ SIRCTCNHDE GVTSLAWLGP SRFVASGCID GMVRIWDSLS GECVRAFAGH GDVVQSLAVS ADGNSIVSVS TDGSALIFDI SMFK

Best Arabidopsis Sequence Match ( AT1G71840.1 )
(BLAST)

001: MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.