Factsheet for Os02t0543400-01

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion, cytosol

Predictor Summary:

plastid 1
nucleus 2
mitochondrion 4
cytosol 2

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05216	Sorghum	cytosol	89.04	88.45
TraesCS6B01G275200.2	Wheat	cytosol	88.04	88.33
TraesCS6D01G232000.1	Wheat	cytosol	87.71	88.0
TraesCS6A01G250200.1	Wheat	cytosol	87.71	88.0
Zm00001d050708_P002	Maize	cytosol	88.37	87.79
HORVU6Hr1G063000.1	Barley	cytosol	88.04	83.33
GSMUA_Achr6P13100_001	Banana	cytosol	77.08	76.32
VIT_09s0002g01580.t01	Wine grape	cytosol	75.42	75.92
HORVU0Hr1G027010.1	Barley	plastid	88.04	73.82
Bra024323.1-P	Field mustard	cytosol	72.09	73.06
CDY08856	Canola	cytosol	72.09	73.06
Solyc11g005550.1.1	Tomato	cytosol	72.43	72.91
CDX84544	Canola	cytosol	72.43	72.67
AT5G64730.1	Thale cress	cytosol	72.09	72.58
PGSC0003DMT400010145	Potato	cytosol	72.09	72.58
KRH59511	Soybean	cytosol, nucleus	72.09	72.33
KRH43376	Soybean	nucleus	72.43	67.91
Os03t0725400-02	Rice	cytosol	27.91	25.93
Os07t0572000-01	Rice	plastid	28.57	25.44
Os06t0653800-01	Rice	nucleus	22.92	20.12
Os11t0594200-01	Rice	cytosol	23.59	14.79
Os10t0104500-01	Rice	cytosol	23.26	14.58
Os03t0746600-01	Rice	nucleus	24.58	14.48
Os03t0685600-01	Rice	cytosol	18.94	14.47
Os03t0339100-01	Rice	nucleus	22.59	14.41
Os01t0780400-02	Rice	cytosol	17.61	6.32
Os10t0494800-01	Rice	cytosol	17.28	5.94
Os04t0677700-00	Rice	cytosol	16.94	5.73
Os01t0531300-00	Rice	endoplasmic reticulum, extracellular	0.33	0.45
Os01t0951000-02	Rice	cytosol, mitochondrion, nucleus	0.33	0.35

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	EntrezGene:4329605	EMBL:AK105242	ProteinID:BAD28241.1	ProteinID:BAF08989.1
ProteinID:BAS79124.1	ProteinID:EEE57153.1	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	EnsemblPlantsGene:Os02g0543400	EnsemblPlants:Os02t0543400-01	PFAM:PF00400	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22847	UniProt:Q6ESX9	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI00003CE64F	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_015622997.1	SEG:seg	:	:	:	:

Description

OsWD40-45WD40 repeat-like domain containing protein. (Os02t0543400-01)

Coordinates

chr2:+:20182213..20186136

Molecular Weight (calculated)

33240.2 Da

IEP (calculated)

7.405

GRAVY (calculated)

-0.193

Length

301 amino acids

Sequence
(BLAST)

001: MAAAAAARLP RTEARVLSGH EGAVLAVRFN RDGNYCLSCG KDRIIRLWNP HTGALVKPYK SHGREVRDVN SSSDNAKLVS CGGDRQVFYW DVASARVIRK
101: FRGHNSEINS VKFNEFNTVV VSAGYDRTVR AFDCRSQSSD PIQTIDTFQD SVMSVNLTNT EIIAGSVDGT IRTFDIRMGR ETVDNLGHPV NCISLSNDRN
201: CLLANCLDST VRLLDKSTGE LLQEYKGHIC KSFKMDCCLT NDDAFVVGGS EDGYIFFWEL VDAPVVSSFR AHSSVVTSVS YHPTRACMLT SSVDGTIRVW
301: T

Best Arabidopsis Sequence Match ( AT5G64730.1 )
(BLAST)

001: MSATELPTKE AHILKGHEGA VLAARFNGDG NYALTCGKDR TIRLWNPHRG ILIKTYKSHG REVRDVHVTS DNAKFCSCGG DRQVYYWDVS TGRVIRKFRG
101: HDGEVNAVKF NDSSSVVVSA GFDRSLRVWD CRSHSVEPVQ IIDTFLDTVM SVVLTKTEII GGSVDGTVRT FDMRIGREMS DNLGQPVNCI SISNDGNCVL
201: AGCLDSTLRL LDRTTGELLQ VYKGHISKSF KTDCCLTNSD AHVIGGSEDG LVFFWDLVDA KVLSKFRAHD LVVTSVSYHP KEDCMLTSSV DGTIRVWKK

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.