Factsheet for Zm00001d050708_P002

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

plastid 2
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	plastid
TargetP:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
EES05216	Sorghum	cytosol	98.35	98.35
Os02t0543400-01	Rice	cytosol, mitochondrion	87.79	88.37
TraesCS6B01G275200.2	Wheat	cytosol	86.14	87.0
TraesCS6D01G232000.1	Wheat	cytosol	85.81	86.67
TraesCS6A01G250200.1	Wheat	cytosol	85.81	86.67
HORVU6Hr1G063000.1	Barley	cytosol	86.47	82.39
GSMUA_Achr6P13100_001	Banana	cytosol	75.91	75.66
VIT_09s0002g01580.t01	Wine grape	cytosol	73.27	74.25
KRH59511	Soybean	cytosol, nucleus	72.61	73.33
HORVU0Hr1G027010.1	Barley	plastid	86.47	72.98
Solyc11g005550.1.1	Tomato	cytosol	70.63	71.57
PGSC0003DMT400010145	Potato	cytosol	70.3	71.24
Bra024323.1-P	Field mustard	cytosol	69.64	71.04
CDY08856	Canola	cytosol	69.64	71.04
CDX84544	Canola	cytosol	69.97	70.67
AT5G64730.1	Thale cress	cytosol	68.98	69.9
KRH43376	Soybean	nucleus	72.94	68.85
Zm00001d033849_P002	Maize	extracellular, nucleus	27.72	26.33
Zm00001d021868_P001	Maize	plastid	25.74	23.78
Zm00001d021866_P001	Maize	plastid	25.41	23.48
Zm00001d046930_P001	Maize	cytosol, extracellular, plasma membrane	22.11	20.55
Zm00001d036709_P001	Maize	cytosol	22.11	20.55
Zm00001d033994_P002	Maize	mitochondrion, nucleus	24.42	14.6
Zm00001d039211_P006	Maize	cytosol	23.1	14.08
Zm00001d033309_P003	Maize	cytosol	21.78	13.66
Zm00001d041945_P003	Maize	cytosol	19.14	13.65
Zm00001d011779_P005	Maize	cytosol	20.13	12.45
Zm00001d042091_P002	Maize	cytosol, mitochondrion, nucleus, peroxisome, plastid	22.44	9.47
Zm00001d033713_P002	Maize	cytosol, extracellular, plastid	14.19	8.58
Zm00001d012620_P025	Maize	cytosol	17.49	6.35
Zm00001d026621_P006	Maize	cytosol	18.15	6.04
Zm00001d001828_P033	Maize	cytosol	18.15	5.97
Zm00001d032598_P023	Maize	cytosol, plasma membrane, plastid	18.15	5.96

Protein Annotations

EntrezGene:100274103	Gene3D:2.130.10.10	MapMan:35.1	ProteinID:AQK52942.1	UniProt:B4FZ26	EMBL:BT042364
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22847	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI00017B7660	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	EnsemblPlantsGene:Zm00001d050708	EnsemblPlants:Zm00001d050708_P002	EnsemblPlants:Zm00001d050708_T002	SEG:seg	:

Description

Transducin/WD40 repeat-like superfamily protein

Coordinates

chr4:+:117425493..117430233

Molecular Weight (calculated)

33486.2 Da

IEP (calculated)

7.453

GRAVY (calculated)

-0.320

Length

303 amino acids

Sequence
(BLAST)

001: MTSSGTVAQQ LPRTEARSLS GHEGAVLAVR FNRDGNYCLS CGKDRTLRLW NPHTGAQVKT YKSHAREVRD VHSSSDNAKL VSCGADRQIF YWDVASGRVI
101: RKFRGHNSEV NSVKFNEYNA VVVSAGYDRT VRAFDCRSQN NDPIQTIDTF QDSVMSVNLT KTEIIAGSVD GTVRAFDIRM GRETVDNLGH PVNCVSLSND
201: NNCLLANCLD STVRLLDKSS GELLQEYKGH TCKSFKMDSC LTNDDAFVVG GSEDGYIFFW ELVDAPVVAR FRAHSSVVTS ISYHPTKACM LTSSVDGSIR
301: VWT

Best Arabidopsis Sequence Match ( AT5G64730.1 )
(BLAST)

001: MSATELPTKE AHILKGHEGA VLAARFNGDG NYALTCGKDR TIRLWNPHRG ILIKTYKSHG REVRDVHVTS DNAKFCSCGG DRQVYYWDVS TGRVIRKFRG
101: HDGEVNAVKF NDSSSVVVSA GFDRSLRVWD CRSHSVEPVQ IIDTFLDTVM SVVLTKTEII GGSVDGTVRT FDMRIGREMS DNLGQPVNCI SISNDGNCVL
201: AGCLDSTLRL LDRTTGELLQ VYKGHISKSF KTDCCLTNSD AHVIGGSEDG LVFFWDLVDA KVLSKFRAHD LVVTSVSYHP KEDCMLTSSV DGTIRVWKK

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.