Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 1
- cytosol 3
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| CDY08856 | Canola | cytosol | 95.65 | 96.3 |
| Bra024323.1-P | Field mustard | cytosol | 95.65 | 96.3 |
| CDX84544 | Canola | cytosol | 95.99 | 95.67 |
| VIT_09s0002g01580.t01 | Wine grape | cytosol | 80.94 | 80.94 |
| KRH59511 | Soybean | cytosol, nucleus | 80.6 | 80.33 |
| Solyc11g005550.1.1 | Tomato | cytosol | 79.93 | 79.93 |
| PGSC0003DMT400010145 | Potato | cytosol | 79.93 | 79.93 |
| GSMUA_Achr6P13100_001 | Banana | cytosol | 80.94 | 79.61 |
| KRH43376 | Soybean | nucleus | 80.94 | 75.39 |
| Os02t0543400-01 | Rice | cytosol, mitochondrion | 72.58 | 72.09 |
| TraesCS6B01G275200.2 | Wheat | cytosol | 70.57 | 70.33 |
| TraesCS6D01G232000.1 | Wheat | cytosol | 70.23 | 70.0 |
| TraesCS6A01G250200.1 | Wheat | cytosol | 70.23 | 70.0 |
| EES05216 | Sorghum | cytosol | 70.23 | 69.31 |
| Zm00001d050708_P002 | Maize | cytosol | 69.9 | 68.98 |
| HORVU6Hr1G063000.1 | Barley | cytosol | 70.23 | 66.04 |
| HORVU0Hr1G027010.1 | Barley | plastid | 70.23 | 58.5 |
| AT4G02730.1 | Thale cress | cytosol | 30.77 | 27.63 |
| AT3G49660.1 | Thale cress | cytosol | 28.09 | 26.5 |
| AT2G43770.1 | Thale cress | cytosol | 25.75 | 22.45 |
| AT1G71840.1 | Thale cress | nucleus | 20.07 | 14.74 |
| AT3G16650.1 | Thale cress | cytosol | 23.08 | 14.4 |
| AT5G52820.1 | Thale cress | cytosol | 22.41 | 14.16 |
| AT5G50230.1 | Thale cress | cytosol | 24.08 | 14.15 |
| AT4G15900.1 | Thale cress | cytosol | 22.41 | 13.79 |
| AT5G13480.2 | Thale cress | nucleus | 20.74 | 9.44 |
| AT5G08390.1 | Thale cress | cytosol | 17.39 | 6.2 |
| AT5G23430.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 16.72 | 5.97 |
| AT1G11160.1 | Thale cress | cytosol | 19.4 | 5.68 |
| AT1G61210.1 | Thale cress | cytosol | 18.39 | 4.66 |
Protein Annotations
| Gene3D:2.130.10.10 | MapMan:35.1 | EntrezGene:836594 | ProteinID:AED97944.1 | ArrayExpress:AT5G64730 | EnsemblPlantsGene:AT5G64730 |
| RefSeq:AT5G64730 | TAIR:AT5G64730 | RefSeq:AT5G64730-TAIR-G | EnsemblPlants:AT5G64730.1 | TAIR:AT5G64730.1 | EMBL:AY046038 |
| EMBL:AY113956 | Unigene:At.9776 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0080008 | InterPro:IPR001680 | InterPro:IPR015943 |
| InterPro:IPR017986 | RefSeq:NP_568993.1 | PFAM:PF00400 | PO:PO:0000013 | PO:PO:0000037 | PO:PO:0000230 |
| PO:PO:0000293 | PO:PO:0001017 | PO:PO:0001054 | PO:PO:0001078 | PO:PO:0001081 | PO:PO:0001185 |
| PO:PO:0004507 | PO:PO:0007064 | PO:PO:0007095 | PO:PO:0007098 | PO:PO:0007103 | PO:PO:0007115 |
| PO:PO:0007123 | PO:PO:0007611 | PO:PO:0007616 | PO:PO:0008019 | PO:PO:0009005 | PO:PO:0009006 |
| PO:PO:0009009 | PO:PO:0009010 | PO:PO:0009025 | PO:PO:0009029 | PO:PO:0009030 | PO:PO:0009031 |
| PO:PO:0009032 | PO:PO:0009046 | PO:PO:0009047 | PO:PO:0009052 | PO:PO:0020030 | PO:PO:0020038 |
| PO:PO:0020100 | PO:PO:0020137 | PO:PO:0025022 | PO:PO:0025281 | PRINTS:PR00320 | ScanProsite:PS00678 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22847 | UniProt:Q94AH2 | SMART:SM00320 | SUPFAM:SSF50978 |
| UniParc:UPI000009FECB | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| SEG:seg | : | : | : | : | : |
Description
Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AH2]
Coordinates
chr5:+:25873101..25875293
Molecular Weight (calculated)
33067.3 Da
IEP (calculated)
7.501
GRAVY (calculated)
-0.209
Length
299 amino acids
Sequence
(BLAST)
(BLAST)
001: MSATELPTKE AHILKGHEGA VLAARFNGDG NYALTCGKDR TIRLWNPHRG ILIKTYKSHG REVRDVHVTS DNAKFCSCGG DRQVYYWDVS TGRVIRKFRG
101: HDGEVNAVKF NDSSSVVVSA GFDRSLRVWD CRSHSVEPVQ IIDTFLDTVM SVVLTKTEII GGSVDGTVRT FDMRIGREMS DNLGQPVNCI SISNDGNCVL
201: AGCLDSTLRL LDRTTGELLQ VYKGHISKSF KTDCCLTNSD AHVIGGSEDG LVFFWDLVDA KVLSKFRAHD LVVTSVSYHP KEDCMLTSSV DGTIRVWKK
101: HDGEVNAVKF NDSSSVVVSA GFDRSLRVWD CRSHSVEPVQ IIDTFLDTVM SVVLTKTEII GGSVDGTVRT FDMRIGREMS DNLGQPVNCI SISNDGNCVL
201: AGCLDSTLRL LDRTTGELLQ VYKGHISKSF KTDCCLTNSD AHVIGGSEDG LVFFWDLVDA KVLSKFRAHD LVVTSVSYHP KEDCMLTSSV DGTIRVWKK
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.