Skip to main content
crop-pal logo
Thale cress
Search for another protein from :
Thale cress
Subcellular Localization
min:
: max

 
Winner_takes_all: mitochondrion, plastid, nucleus, cytosol

Predictor Summary:
  • nucleus 2
  • cytosol 1
  • mitochondrion 2
  • plastid 1
Predictors GFP MS/MS Papers
Winner Takes All:cytosol, mitochondrion, nucleus, plastid
Any Predictor:cytosol, mitochondrion, nucleus, plastid
BaCelLo:nucleus
MultiLoc:cytosol
PProwler:mitochondrion
TargetP:mitochondrion
WoLF PSORT:plastid
YLoc:nucleus
PPI
No PPI Data
Homology

Paralog

locusIdentityHomology Identity

Ortholog

locusHomology SpeciesLocationIdentityHomology Identity
CDX88026 Canola cytosol 90.08 90.95
CDX80363 Canola cytosol 89.37 88.0
Bra009683.1-P Field mustard cytosol 88.89 82.12
AT5G08390.1 Thale cress cytosol 80.05 79.86
VIT_10s0071g01150.t01 Wine grape cytosol 62.01 65.12
GSMUA_Achr3P27210_001 Banana golgi 36.8 65.12
KRG93160 Soybean cytosol 57.71 63.64
KRH56498 Soybean cytosol 57.47 63.37
Solyc02g021360.2.1 Tomato cytosol 58.18 61.03
GSMUA_Achr4P05370_001 Banana golgi, mitochondrion 54.36 57.38
PGSC0003DMT400065114 Potato cytosol 54.12 55.86
Solyc04g008720.2.1 Tomato cytosol 54.0 55.8
Zm00001d026621_P006 Maize cytosol 51.49 47.36
TraesCS2D01G561900.1 Wheat cytosol 52.21 47.24
KXG27434 Sorghum cytosol 51.85 47.17
Zm00001d001828_P033 Maize cytosol 51.85 47.07
TraesCS2A01G592600.1 Wheat cytosol 51.97 47.03
TraesCS2B01G591600.2 Wheat cytosol 51.13 46.67
Os04t0677700-00 Rice cytosol 47.43 44.61
GSMUA_Achr9P23740_001 Banana golgi 53.64 42.84
AT1G11160.1 Thale cress cytosol 40.02 32.81
AT1G61210.1 Thale cress cytosol 40.02 28.37
AT3G49660.1 Thale cress cytosol 8.84 23.34
AT2G43770.1 Thale cress cytosol 8.84 21.57
AT4G02730.1 Thale cress cytosol 8.12 20.42
AT1G71840.1 Thale cress nucleus 8.48 17.44
AT5G64730.1 Thale cress cytosol 5.97 16.72
AT5G52820.1 Thale cress cytosol 8.96 15.86
AT5G50230.1 Thale cress cytosol 9.08 14.93
AT4G15900.1 Thale cress cytosol 8.36 14.4
AT3G16650.1 Thale cress cytosol 8.12 14.2
AT5G13480.2 Thale cress nucleus 10.27 13.09
Protein Annotations
MapMan:13.4.4.2.2Gene3D:2.130.10.10EntrezGene:832409ProteinID:AED93166.1ProteinID:AED93167.1ProteinID:ANM69335.1
ArrayExpress:AT5G23430EnsemblPlantsGene:AT5G23430RefSeq:AT5G23430TAIR:AT5G23430RefSeq:AT5G23430-TAIR-GEnsemblPlants:AT5G23430.1
TAIR:AT5G23430.1Unigene:At.45963ProteinID:BAB09559.1EMBL:BT002053InterPro:G-protein_beta_WD-40_repGO:GO:0003674
GO:GO:0005488GO:GO:0005515GO:GO:0005575GO:GO:0005622GO:GO:0005623GO:GO:0005737
GO:GO:0005856GO:GO:0005874GO:GO:0008017GO:GO:0008150GO:GO:0008352GO:GO:0009987
GO:GO:0016043GO:GO:0051013GO:GO:0080008InterPro:IPR001680InterPro:IPR015943InterPro:IPR017986
InterPro:Katanin_C-terminalInterPro:Katanin_bsu1HAMAP:MF_03022RefSeq:NP_001318628.1RefSeq:NP_197734.2RefSeq:NP_851064.1
PFAM:PF00400PFAM:PF13925PO:PO:0000013PO:PO:0000037PO:PO:0000084PO:PO:0000230
PO:PO:0000293PO:PO:0001054PO:PO:0001078PO:PO:0001081PO:PO:0001185PO:PO:0004507
PO:PO:0007095PO:PO:0007098PO:PO:0007115PO:PO:0007123PO:PO:0007611PO:PO:0007616
PO:PO:0008019PO:PO:0009005PO:PO:0009006PO:PO:0009009PO:PO:0009010PO:PO:0009025
PO:PO:0009029PO:PO:0009030PO:PO:0009031PO:PO:0009032PO:PO:0009046PO:PO:0009047
PO:PO:0009052PO:PO:0020030PO:PO:0020038PO:PO:0020100PO:PO:0020137PO:PO:0025022
PO:PO:0025281PRINTS:PR00320ScanProsite:PS00678PFscan:PS50082PFscan:PS50294PANTHER:PTHR19845
PANTHER:PTHR19845:SF5UniProt:Q8H0T9SMART:SM00320SUPFAM:SSF50978UniParc:UPI00000ADB59InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeatInterPro:WD40_repeat_CSInterPro:WD40_repeat_domInterPro:WD40_repeat_dom_sfSEG:seg:
Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8H0T9]
Coordinates
chr5:-:7893594..7900563
Molecular Weight (calculated)
91439.0 Da
IEP (calculated)
8.779
GRAVY (calculated)
-0.456
Length
837 amino acids
Sequence
(BLAST)
001: MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARRGGL VAKSVLELNL AFQEVSS
Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.