Factsheet for PGSC0003DMT400065114

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc04g008720.2.1	Tomato	cytosol	96.79	96.91
PGSC0003DMT400056447	Potato	extracellular	10.48	80.19
PGSC0003DMT400056446	Potato	cytosol	52.16	74.08
VIT_10s0071g01150.t01	Wine grape	cytosol	65.23	66.37
KRG93160	Soybean	cytosol	60.05	64.16
KRH56498	Soybean	cytosol	59.93	64.03
GSMUA_Achr3P27210_001	Banana	golgi	37.24	63.85
GSMUA_Achr4P05370_001	Banana	golgi, mitochondrion	55.98	57.25
AT5G23430.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	55.86	54.12
CDX88026	Canola	cytosol	55.24	54.04
AT5G08390.1	Thale cress	cytosol	54.87	53.04
CDX80363	Canola	cytosol	54.5	52.0
CDY60225	Canola	cytosol	53.02	51.5
Bra005990.1-P	Field mustard	cytosol	53.76	51.42
CDX81101	Canola	cytosol	53.02	51.13
Bra009683.1-P	Field mustard	cytosol	54.25	48.57
Zm00001d026621_P006	Maize	cytosol	53.27	47.47
KXG27434	Sorghum	cytosol	53.76	47.39
TraesCS2A01G592600.1	Wheat	cytosol	53.64	47.03
TraesCS2D01G561900.1	Wheat	cytosol	53.64	47.03
Zm00001d001828_P033	Maize	cytosol	52.9	46.53
TraesCS2B01G591600.2	Wheat	cytosol	52.28	46.24
Os04t0677700-00	Rice	cytosol	50.68	46.18
GSMUA_Achr9P23740_001	Banana	golgi	57.09	44.18
PGSC0003DMT400049837	Potato	cytosol, plastid	8.63	22.22
PGSC0003DMT400023040	Potato	mitochondrion	8.26	21.82
PGSC0003DMT400078695	Potato	cytosol	8.38	21.66
PGSC0003DMT400067694	Potato	cytosol	8.01	19.12
PGSC0003DMT400057760	Potato	cytosol	18.62	18.99
PGSC0003DMT400073944	Potato	cytoskeleton, cytosol, nucleus	8.01	16.37
PGSC0003DMT400046634	Potato	cytosol	9.25	15.59
PGSC0003DMT400010145	Potato	cytosol	5.67	15.38
PGSC0003DMT400039207	Potato	cytosol	7.89	12.57

Protein Annotations

EntrezGene:102601996	MapMan:13.4.4.2.2	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856
GO:GO:0005874	GO:GO:0008017	GO:GO:0008150	GO:GO:0008352	GO:GO:0009987	GO:GO:0016043
GO:GO:0051013	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:Katanin_C-terminal	InterPro:Katanin_bsu1
UniProt:M1CDF7	HAMAP:MF_03022	PFAM:PF00400	PFAM:PF13925	EnsemblPlantsGene:PGSC0003DMG400025310	PGSC:PGSC0003DMG400025310
EnsemblPlants:PGSC0003DMT400065114	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19845
PANTHER:PTHR19845:SF5	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000294B7B8	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat
InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006360856.1	SEG:seg	:

Description

Katanin P80 subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400025310]

Coordinates

chr4:+:3877902..3886491

Molecular Weight (calculated)

89181.9 Da

IEP (calculated)

7.235

GRAVY (calculated)

-0.327

Length

811 amino acids

Sequence
(BLAST)

001: MTTTKRAYKL QEFVAHSLSV NCLKIGRKSS RVLVTGGEDH KVNLWSIGKP DAILSLSGHS SGIDSVSFDS LEVLVAAGAA SGTIKLWDLE EAKIVRTLTG
101: HRSNCISLDF HPFGEFFASG SLDTNLKIWD IRRKGCIHTY KGHTRGVNTI RFTPDGRWVV SGGEDSSVKI WDLTAGKLLH DFKCHEGKIQ CIDFHPHEFL
201: LATGSADKTV KFWDLESFEL IGSAGPETTG VRSMAFNTDG RTLLCGLHEN LKVFSWEPIR YHDTVDVGWS TLSDLSIHEG KLLGCSYNQS CVGVWVVDIS
301: CLEPYTMDSS TPSNGHSAAK SNLRVNLSTS AEDARDASCG GQLISQNSDL VKESKSFRRL SLSQNMVLQR DSAALTTITD TPGTTQKVNL STGPKAPPFS
401: SRAVPNTTGV KRNSAKTQST ENGSIVNKSE IIPVLVPRNN ERTELASECR KGGVAGREMP QRLQPKVSDW KSPTTNEDLR MSTSAAQSEV EVPKAIESSS
501: PADRNTFPSV KCSIFETAAT DRSVNDDKNL VSTKLDINTA HEPLSRHQIE NYESRGNILN RKPYSMLGQQ RGRTRSTIAN WEKRDKVPGY EGLAPCTVGA
601: VPAPDVVPTN VNLTHHNSKI VHEKREDLLS AVSEAVSPDD EDIIADLMEQ HKEFVGSMQS RLAKLQVVYQ YWKRHDIKGA VSVMEKMADH AVLSELVSFL
701: AEKNDIITLE ICTCLLPLLT GLLESKLDRH QDISLSMLLK LVKVFGSLIY TSLSTPTSVG VDIEAEKRME RYNLCFIELE KVKSCLPALS RRGGSIAKTA
801: QELNLALHEV S

Best Arabidopsis Sequence Match ( AT5G23430.1 )
(BLAST)

001: MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARRGGL VAKSVLELNL AFQEVSS

Arabidopsis Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8H0T9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.