Factsheet for PGSC0003DMT400023040

Subcellular Localization

min:

: max

Winner_takes_all: mitochondrion

Predictor Summary:

nucleus 3
mitochondrion 5
cytosol 1

Predictors

GFP

MS/MS

Papers

PPI

Inferred distinct locusB in Crop

locusB	locations
PGSC0003DMT400009595
PGSC0003DMT400010646
PGSC0003DMT400018802
PGSC0003DMT400029953
PGSC0003DMT400063153
PGSC0003DMT400076768

Inferred from Arabidopsis experimental PPI

Ath locusA	locusB	Ath locusB	Paper
AT4G15900.1	PGSC0003DMT400029953	AT1G09770.1	17575050
AT4G15900.1	PGSC0003DMT400063153	AT3G29160.1	10220464
AT4G15900.1	PGSC0003DMT400018802	AT4G02150.1	9765207
AT4G15900.1	PGSC0003DMT400076768	AT4G02150.1	9765207
AT4G15900.1	PGSC0003DMT400009595	AT4G05420.1	18223036
AT4G15900.1	PGSC0003DMT400010646	AT5G58720.1	10220464

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc09g010620.1.1	Tomato	cytosol	44.95	84.66
GSMUA_Achr8P10200_001	Banana	cytosol	20.2	69.66
CDY27174	Canola	cytosol	28.34	56.86
GSMUA_Achr8P10210_001	Banana	cytosol	17.59	56.84
KRH12069	Soybean	nucleus	76.22	49.16
CDY44171	Canola	cytosol	24.76	49.03
Bra007287.1-P	Field mustard	cytosol	63.84	49.0
KRH37088	Soybean	nucleus	75.57	48.64
VIT_05s0077g02310.t01	Wine grape	cytosol	75.9	48.14
Os03t0339100-01	Rice	nucleus	73.29	47.67
GSMUA_Achr11P...	Banana	cytosol, nucleus, peroxisome, plastid	74.27	46.91
KXG25821	Sorghum	cytosol	72.31	46.35
TraesCS3D01G181100.1	Wheat	cytosol	71.99	46.14
TraesCS3B01G205300.1	Wheat	cytosol	71.99	46.14
TraesCS3A01G175600.2	Wheat	plastid	71.66	46.03
Zm00001d033309_P003	Maize	cytosol	72.31	45.96
Bra012753.1-P	Field mustard	cytosol	71.34	45.53
AT4G15900.1	Thale cress	cytosol	71.66	45.27
AT3G16650.1	Thale cress	cytosol	69.06	44.26
HORVU3Hr1G035450.7	Barley	mitochondrion	71.99	43.16
Bra021188.1-P	Field mustard	cytosol	68.73	42.45
GSMUA_Achr8P10190_001	Banana	cytosol, plastid	27.36	30.43
PGSC0003DMT400078695	Potato	cytosol	21.5	21.02
PGSC0003DMT400049837	Potato	cytosol, plastid	21.17	20.63
PGSC0003DMT400010145	Potato	cytosol	19.22	19.73
PGSC0003DMT400067694	Potato	cytosol	20.52	18.53
PGSC0003DMT400073944	Potato	cytoskeleton, cytosol, nucleus	23.78	18.39
PGSC0003DMT400046634	Potato	cytosol	23.45	14.97
PGSC0003DMT400056446	Potato	cytosol	20.85	11.21
PGSC0003DMT400039207	Potato	cytosol	16.94	10.22
PGSC0003DMT400065114	Potato	cytosol	21.82	8.26
PGSC0003DMT400057760	Potato	cytosol	2.28	0.88
PGSC0003DMT400056447	Potato	extracellular	0.0	0.0

Protein Annotations

EntrezGene:102583474	MapMan:16.4.5.1.3	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1AHN6	PFAM:PF00400
EnsemblPlantsGene:PGSC0003DMG400008918	PGSC:PGSC0003DMG400008918	EnsemblPlants:PGSC0003DMT400023040	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19923	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI00029557E8	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_006341218.1	:

Description

PP1/PP2A phosphatases pleiotropic regulator PRL1 [Source:PGSC_GENE;Acc:PGSC0003DMG400008918]

Coordinates

chr9:-:1966115..1967038

Molecular Weight (calculated)

34289.9 Da

IEP (calculated)

9.076

GRAVY (calculated)

-0.355

Length

307 amino acids

Sequence
(BLAST)

001: MERGWRNYRV ISGHSGWVRS VAVDPNNTWF CTGSADHTIK IWDLASGRLK LTLTGHVGQI RGVAIRNKNM FSGGEDKQVK CWDLEQNKVI HSFHGHLHGV
101: YCLALHPTID VLFTGSRDCV CRVWDIRTKT HVHAFSGHEN TVSSILTLPA HPQVVVTGSH DSTIKLWDIR YGKTMETLTH HKKTVRAMAH HPKGNCSSFA
201: SASTDGNIKK FNLPNGQLLH NMLPQQMTII NAMAVNDEGV MATGGDNGSL WFWDWTSGHN FQQARTKVQP GSSMDTDAAI YALTYDVTGT ILITCEGDKT
301: IKMWKQR

Best Arabidopsis Sequence Match ( AT4G15900.1 )
(BLAST)

001: MPAPTTEIEP IEAQSLKKLS LKSLKRSLEL FSPVHGQFPP PDPEAKQIRL SHKMKVAFGG VEPVVSQPPR QPDRINEQPG PSNALSLAAP EGSKSTQKGA
101: TESAIVVGPT LLRPILPKGL NYTGSSGKST TIIPANVSSY QRNLSTAALM ERIPSRWPRP EWHAPWKNYR VIQGHLGWVR SVAFDPSNEW FCTGSADRTI
201: KIWDVATGVL KLTLTGHIEQ VRGLAVSNRH TYMFSAGDDK QVKCWDLEQN KVIRSYHGHL SGVYCLALHP TLDVLLTGGR DSVCRVWDIR TKMQIFALSG
301: HDNTVCSVFT RPTDPQVVTG SHDTTIKFWD LRYGKTMSTL THHKKSVRAM TLHPKENAFA SASADNTKKF SLPKGEFCHN MLSQQKTIIN AMAVNEDGVM
401: VTGGDNGSIW FWDWKSGHSF QQSETIVQPG SLESEAGIYA ACYDNTGSRL VTCEADKTIK MWKEDENATP ETHPINFKPP KEIRRF

Arabidopsis Description

PRL1Protein pleiotropic regulatory locus 1 [Source:UniProtKB/Swiss-Prot;Acc:Q42384]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.