Factsheet for PGSC0003DMT400073944

Subcellular Localization

min:

: max

Winner_takes_all: cytoskeleton, nucleus, cytosol

Predictor Summary:

cytosol 2
nucleus 2
mitochondrion 1
cytoskeleton 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
Solyc07g008860.2.1	Tomato	cytoskeleton, cytosol, nucleus	97.48	97.48
VIT_11s0016g02220.t01	Wine grape	cytosol	69.52	70.23
VIT_18s0164g00020.t01	Wine grape	nucleus	68.77	69.82
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	67.0	68.03
GSMUA_Achr11P...	Banana	cytosol	55.42	63.77
AT1G71840.1	Thale cress	nucleus	64.74	63.15
CDX72834	Canola	cytosol	62.72	62.56
CDY36678	Canola	cytosol	60.96	62.21
CDX68298	Canola	cytosol	60.96	62.21
Bra016111.1-P	Field mustard	cytosol	61.71	61.4
Bra003910.1-P	Field mustard	cytosol	58.44	61.38
CDX96351	Canola	cytosol	60.96	60.65
TraesCS2A01G126700.2	Wheat	cytoskeleton, cytosol, nucleus	59.19	59.19
TraesCS1A01G358200.1	Wheat	cytoskeleton, cytosol, nucleus	32.75	59.09
TraesCS2D01G129200.1	Wheat	cytoskeleton, cytosol, nucleus	58.19	58.33
Os03t0685600-01	Rice	cytosol	57.68	58.12
KXG26924	Sorghum	cytoskeleton, cytosol, nucleus	58.19	58.04
TraesCS1B01G374800.1	Wheat	cytosol	57.43	57.87
TraesCS1D01G363000.1	Wheat	cytosol	57.18	57.61
KRH35009	Soybean	cytosol	19.9	57.25
KRH37298	Soybean	cytosol	54.41	56.99
HORVU3Hr1G013230.4	Barley	cytosol	56.42	56.0
Zm00001d041945_P003	Maize	cytosol	56.17	52.47
TraesCS2B01G148600.2	Wheat	cytosol, endoplasmic reticulum, extracellular, golgi, plasma membrane, plastid, vacuole	58.19	47.63
HORVU2Hr1G022250.4	Barley	mitochondrion	58.94	47.18
Zm00001d011779_P005	Maize	cytosol	56.93	46.12
PGSC0003DMT400049837	Potato	cytosol, plastid	21.16	26.67
PGSC0003DMT400078695	Potato	cytosol	19.65	24.84
PGSC0003DMT400023040	Potato	mitochondrion	18.39	23.78
PGSC0003DMT400067694	Potato	cytosol	19.9	23.24
HORVU5Hr1G075920.16	Barley	nucleus	42.32	22.86
PGSC0003DMT400010145	Potato	cytosol	15.62	20.74
PGSC0003DMT400046634	Potato	cytosol	20.91	17.26
PGSC0003DMT400039207	Potato	cytosol	18.39	14.34
PGSC0003DMT400056446	Potato	cytosol	15.11	10.51
PGSC0003DMT400065114	Potato	cytosol	16.37	8.01
PGSC0003DMT400057760	Potato	cytosol	2.77	1.38
PGSC0003DMT400056447	Potato	extracellular	0.25	0.94

Protein Annotations

EntrezGene:102586442	Gene3D:2.130.10.10	MapMan:35.1	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488
GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	UniProt:M1CSW3	PFAM:PF00400
EnsemblPlantsGene:PGSC0003DMG400028735	PGSC:PGSC0003DMG400028735	EnsemblPlants:PGSC0003DMT400073944	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082
PFscan:PS50294	PANTHER:PTHR19857	PANTHER:PTHR19857:SF8	InterPro:Quinoprotein_ADH-like_supfam	SMART:SM00320	SUPFAM:SSF50998
UniParc:UPI000295B412	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	RefSeq:XP_006361639.1
SEG:seg	:	:	:	:	:

Description

Transducin family protein [Source:PGSC_GENE;Acc:PGSC0003DMG400028735]

Coordinates

chr7:+:6504018..6509430

Molecular Weight (calculated)

42869.0 Da

IEP (calculated)

4.038

GRAVY (calculated)

-0.289

Length

397 amino acids

Sequence
(BLAST)

001: MNYPSPHHED DEHEDEVFLE DSDIIEEINV DEEELVDADD DDEEDEQGGG EFMDEADDSL HTFTGHTGEL YTVTCSPTDA SLVVTGGGDD RGFMWKIGQG
101: DFAFELQGHT DSVSSLAFSS DGQLLASGSL DGNIRVWDIT SGGLKDTLEG PEKGIEWVRW HPRGHVVLAG SEDSSIWMWN ADTNAFMNTF LGHAGSVTCG
201: DFTPDGKLIC TGSDDATLRI WDPKSAQSIH VVRGHPYHTE GLTCLAISSD STLALTGSKD GSAHIVNIIT GKVVTSLSAH TDSIECASFS ASAPWAATGG
301: MDNKLIIWDL QQSLPRSTCE HPDGVACLLW LGQYKYVATG CVDGKVRIWD SRSGECVRTF SGHADAIQCL AASSNGEYLV SVSIDETSRV FEIAEFN

Best Arabidopsis Sequence Match ( AT1G71840.1 )
(BLAST)

001: MSNNTNNTEM NNLAMEEEDE GEIFLGESDV LREIDVDEED LPEADDDDMD DDGEQFDEND DSVHTFTGHK GELYALACSP TDATLVATGG GDDKAFLWKI
101: GNGDWAAELP GHKDSVSCLA FSYDGQLLAS GGLDGVVQIF DASSGTLKCV LDGPGAGIEW VRWHPRGHIV LAGSEDCSLW MWNADKEAYL NMFSGHNLNV
201: TCGDFTPDGK LICTGSDDAS LIVWNPKTCE SIHIVKGHPY HTEGLTCLDI NSNSSLAISG SKDGSVHIVN IVTGKVVSSL NSHTDSVECV KFSPSSATIP
301: LAATGGMDKK LIIWDLQHST PRFICEHEEG VTSLTWIGTS KYLATGCANG TVSIWDSLLG NCVHTYHGHQ DAVQAISVST NTDFIVSVSV DNTARVFESS
401: EFQNKVT

Arabidopsis Description

Transducin family protein / WD-40 repeat family protein [Source:UniProtKB/TrEMBL;Acc:Q8RXQ4]
SUBAcon: [nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.