Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 3
- nucleus 1
- mitochondrion 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc02g078800.2.1 | Tomato | extracellular | 88.43 | 68.32 |
| PGSC0003DMT400056447 | Potato | extracellular | 6.16 | 46.23 |
| VIT_00s1406g00010.t01 | Wine grape | cytosol, mitochondrion, nucleus | 16.48 | 44.41 |
| KRH21526 | Soybean | cytosol, peroxisome | 31.7 | 42.07 |
| KRH49977 | Soybean | cytosol | 30.57 | 35.47 |
| KRH10790 | Soybean | cytosol | 31.95 | 30.79 |
| KRH20528 | Soybean | cytosol | 30.06 | 30.72 |
| CDY34658 | Canola | mitochondrion | 23.65 | 24.54 |
| CDY15006 | Canola | cytosol | 30.31 | 23.77 |
| Bra031445.1-P | Field mustard | cytosol | 32.45 | 22.99 |
| CDY52222 | Canola | cytosol | 32.45 | 22.99 |
| CDY34846 | Canola | nucleus | 25.91 | 22.59 |
| CDY03812 | Canola | cytosol | 31.82 | 22.53 |
| AT1G11160.1 | Thale cress | cytosol | 28.8 | 22.43 |
| AT1G61210.1 | Thale cress | cytosol | 32.58 | 21.93 |
| GSMUA_Achr1P08830_001 | Banana | cytosol | 25.91 | 21.28 |
| Os01t0780400-02 | Rice | cytosol | 20.88 | 19.81 |
| Zm00001d012620_P025 | Maize | cytosol | 20.25 | 19.3 |
| OQU87670 | Sorghum | cytosol | 20.13 | 19.23 |
| TraesCS3A01G317500.1 | Wheat | cytosol | 19.75 | 18.89 |
| TraesCS3D01G313800.1 | Wheat | cytosol | 19.62 | 18.84 |
| TraesCS3B01G349000.2 | Wheat | cytosol | 19.62 | 18.77 |
| PGSC0003DMT400065114 | Potato | cytosol | 18.99 | 18.62 |
| HORVU3Hr1G076760.7 | Barley | cytosol, mitochondrion, nucleus | 19.37 | 15.96 |
| PGSC0003DMT400056446 | Potato | cytosol | 6.92 | 9.63 |
| CDY54233 | Canola | golgi | 1.76 | 7.53 |
| PGSC0003DMT400078695 | Potato | cytosol | 1.64 | 4.14 |
| PGSC0003DMT400010145 | Potato | cytosol | 1.38 | 3.68 |
| PGSC0003DMT400049837 | Potato | cytosol, plastid | 1.38 | 3.49 |
| PGSC0003DMT400073944 | Potato | cytoskeleton, cytosol, nucleus | 1.38 | 2.77 |
| PGSC0003DMT400067694 | Potato | cytosol | 1.13 | 2.65 |
| PGSC0003DMT400046634 | Potato | cytosol | 1.38 | 2.29 |
| PGSC0003DMT400023040 | Potato | mitochondrion | 0.88 | 2.28 |
| PGSC0003DMT400039207 | Potato | cytosol | 0.88 | 1.38 |
| KRH21524 | Soybean | cytosol | 0.0 | 0.0 |
Protein Annotations
| EnsemblPlants:PGSC0003DMT400057760 | EnsemblPlantsGene:PGSC0003DMG400022423 | InterPro:Katanin_C-terminal | PANTHER:PTHR19845 | PANTHER:PTHR19845:SF5 | PFAM:PF13925 |
| PGSC:PGSC0003DMG400022423 | SEG:seg | UniParc:UPI000296DD59 | UniProt:M1C1L6 | MapMan:35.1 | : |
Description
WD-40 repeat family protein / katanin p80 subunit [Source:PGSC_GENE;Acc:PGSC0003DMG400022423]
Coordinates
chr2:+:34474267..34481362
Molecular Weight (calculated)
88169.4 Da
IEP (calculated)
7.406
GRAVY (calculated)
-0.564
Length
795 amino acids
Sequence
(BLAST)
(BLAST)
001: MGWSTLSDLC IHDGKLVGGA YYQNYVGVWV ADVSLIDPHG AGLTPDRQSN LEQKQDHVES RLERIGSNRS SNSNLRCSSP DIDSKEIKNI YVDSENPVTI
101: KKVTSPSPKV VPPLDSKENK KQLSQKLNSV VGLPAKTNGL PVGKSFVVPS VVPRDIPEEK NLDTCRRESV SATRVSSGIS QKPSHIKCPS SNNYDMEKIS
201: VALQSEFADN LLRTVDCKKE SDIDSRLMTD NNSRERSEAK DSAVKHGGEK LEKTSLQLPL NSRENRNVAS EGRKELHPVR FVNGVAVVRG RTRSLVERFE
301: KREGLNMDDV HKLDAVSHSK TEERDVSPLP PSCCKDEEQE TFSKFFDEEP ETSPLTASRF KTEEAMRPMP SAHSKVEEAN SYSLPASQYE VEELEASHKP
401: ASKLKSEEIR KAHLPASHSE AEKLEASPMP ASQFKSEQVR ESHLPASCSK AEEFETSPMP ASQFKSEEVR ESHLPASCSK AEEFEISPML ASQVKSEDVR
501: KSRLPTSRSK AGELEASSIP ASQLKPENVR RSRLSASRSK AEELEASPVL VSKFRSGART SRLSAFRSKA EEAKTSRLLA SRSKAEEAQT LRLLSSGSYA
601: EQPQIAPLPN TDQQTIARCE PAQNDDIIIE DLMQCHDVLL STFRSRLTKL QVVRHYWERN DIRGAFEGLR KLSDHSVQAD VVSVLVDKME IITLDLFSFL
701: LPVLLALLDT KIERHANVSL ELLLKLVAVF GPVVRSAVSA RPSVGVDLHA EARIKCCRQC FAYLQDIQKT LPALIRRGGL PAKGAVQLNL LLQES
101: KKVTSPSPKV VPPLDSKENK KQLSQKLNSV VGLPAKTNGL PVGKSFVVPS VVPRDIPEEK NLDTCRRESV SATRVSSGIS QKPSHIKCPS SNNYDMEKIS
201: VALQSEFADN LLRTVDCKKE SDIDSRLMTD NNSRERSEAK DSAVKHGGEK LEKTSLQLPL NSRENRNVAS EGRKELHPVR FVNGVAVVRG RTRSLVERFE
301: KREGLNMDDV HKLDAVSHSK TEERDVSPLP PSCCKDEEQE TFSKFFDEEP ETSPLTASRF KTEEAMRPMP SAHSKVEEAN SYSLPASQYE VEELEASHKP
401: ASKLKSEEIR KAHLPASHSE AEKLEASPMP ASQFKSEQVR ESHLPASCSK AEEFETSPMP ASQFKSEEVR ESHLPASCSK AEEFEISPML ASQVKSEDVR
501: KSRLPTSRSK AGELEASSIP ASQLKPENVR RSRLSASRSK AEELEASPVL VSKFRSGART SRLSAFRSKA EEAKTSRLLA SRSKAEEAQT LRLLSSGSYA
601: EQPQIAPLPN TDQQTIARCE PAQNDDIIIE DLMQCHDVLL STFRSRLTKL QVVRHYWERN DIRGAFEGLR KLSDHSVQAD VVSVLVDKME IITLDLFSFL
701: LPVLLALLDT KIERHANVSL ELLLKLVAVF GPVVRSAVSA RPSVGVDLHA EARIKCCRQC FAYLQDIQKT LPALIRRGGL PAKGAVQLNL LLQES
0001: MAKRGYKLQE FLAHSANVNC LSIGKKTSRL FITGGDDYKV NLWAIGKPTS LMSLCGHTSA VDSVAFDSAE VLVLAGASSG VIKLWDVEEA KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDSTGGNSAV AHKSGSLSTP ATSTGQAGDN KSLVVHSVVP RDSDIGKDSS
0401: DSGKESITFS KTKPGMLLRP AYVRKTPTKF DETKKQSVAV GYLKKSGLDG EKKLDTETAF DSEMSGRNPY DADDSIIKSI TNKFEQALLP ESPTDEAKCM
0501: LLKPPRVQRS PSTKYNEARW ATSTDSGALD SKKNGLESSR DMDLPTGLRD DRGSNPCEED IENKSISSRS ERVLSPEKAG DELKSLESPG GSKESKSVKV
0601: VRGVKVVSGR TRSLVERFER GEKITHSEDK AASATVVHSS NSVEEEPLTA SVQTVSMMPT QVMPVKLDQA TNSTTVDVPV LSTRRTKSTP VRVMPVVLGR
0701: DTSMATDTPP VTSTRPDRTS ATNLTSDVSG VTSKRQTRTS PAPVMPMILN QTTKMKSDEP SITSTWPDRT SATDLTSDVS GVISSRQTRT SPAPVMPMKL
0801: NQKTKIKSDE PPITSTRPDR PSATNLTSDE SPVTSTRQAK TSPAPVTPVI LNQRQTTNMK SDEPPVISTR PLRTSSARVM PVILNQASTT YDERPLSSSR
0901: SARTSPARIM PMKLNQADNM PSYEPPVALT RSARNSPARV IPVKLNQATN VTADASHIRS RQRFSPTQTL ATPAVFDQVT DMTLDETTKT QQSSDILTQK
1001: EEPQISGRED DGDIWEILMR THSEVLNTLQ SRLTKLQIVR HFWERSDIKG AIAALRKLSD HSVQADVINI LTDKTEILTL DLFSQLAPVL TGLLGSKTER
1101: PVNVSLEMLL KLVAVFGTVI QSTVSARRVV GVDLHAEERL QICQSCSAEL QKVQKILPLL TRRGGLIARK AQELNLVLQT P
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDSTGGNSAV AHKSGSLSTP ATSTGQAGDN KSLVVHSVVP RDSDIGKDSS
0401: DSGKESITFS KTKPGMLLRP AYVRKTPTKF DETKKQSVAV GYLKKSGLDG EKKLDTETAF DSEMSGRNPY DADDSIIKSI TNKFEQALLP ESPTDEAKCM
0501: LLKPPRVQRS PSTKYNEARW ATSTDSGALD SKKNGLESSR DMDLPTGLRD DRGSNPCEED IENKSISSRS ERVLSPEKAG DELKSLESPG GSKESKSVKV
0601: VRGVKVVSGR TRSLVERFER GEKITHSEDK AASATVVHSS NSVEEEPLTA SVQTVSMMPT QVMPVKLDQA TNSTTVDVPV LSTRRTKSTP VRVMPVVLGR
0701: DTSMATDTPP VTSTRPDRTS ATNLTSDVSG VTSKRQTRTS PAPVMPMILN QTTKMKSDEP SITSTWPDRT SATDLTSDVS GVISSRQTRT SPAPVMPMKL
0801: NQKTKIKSDE PPITSTRPDR PSATNLTSDE SPVTSTRQAK TSPAPVTPVI LNQRQTTNMK SDEPPVISTR PLRTSSARVM PVILNQASTT YDERPLSSSR
0901: SARTSPARIM PMKLNQADNM PSYEPPVALT RSARNSPARV IPVKLNQATN VTADASHIRS RQRFSPTQTL ATPAVFDQVT DMTLDETTKT QQSSDILTQK
1001: EEPQISGRED DGDIWEILMR THSEVLNTLQ SRLTKLQIVR HFWERSDIKG AIAALRKLSD HSVQADVINI LTDKTEILTL DLFSQLAPVL TGLLGSKTER
1101: PVNVSLEMLL KLVAVFGTVI QSTVSARRVV GVDLHAEERL QICQSCSAEL QKVQKILPLL TRRGGLIARK AQELNLVLQT P
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4HTH8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.