Factsheet for Bra031445.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY52222	Canola	cytosol	98.66	98.66
CDY03812	Canola	cytosol	97.06	96.97
AT1G61210.1	Thale cress	cytosol	81.19	77.14
VIT_00s0776g00020.t01	Wine grape	cytosol, mitochondrion, nucleus	28.61	61.61
KRH20528	Soybean	cytosol	39.39	56.81
KRH49977	Soybean	cytosol	33.33	54.6
VIT_00s1397g00010.t01	Wine grape	cytosol	14.26	47.2
Solyc02g078800.2.1	Tomato	extracellular	42.34	46.16
TraesCS3D01G313800.1	Wheat	cytosol	32.17	43.6
TraesCS3A01G317500.1	Wheat	cytosol	32.17	43.44
TraesCS3B01G349000.2	Wheat	cytosol	32.09	43.32
Os01t0780400-02	Rice	cytosol	32.17	43.08
Zm00001d012620_P025	Maize	cytosol	31.82	42.81
OQU87670	Sorghum	cytosol	31.55	42.55
GSMUA_Achr1P08830_001	Banana	cytosol	35.56	41.22
Bra005990.1-P	Field mustard	cytosol	29.77	39.39
HORVU3Hr1G076760.7	Barley	cytosol, mitochondrion, nucleus	32.17	37.41
Bra009683.1-P	Field mustard	cytosol	29.32	36.31
PGSC0003DMT400057760	Potato	cytosol	22.99	32.45
Bra019610.1-P	Field mustard	plastid	6.33	22.4
Bra003387.1-P	Field mustard	cytosol	6.6	22.02
Bra018529.1-P	Field mustard	cytosol	5.88	20.25
Bra024323.1-P	Field mustard	cytosol	4.72	17.85
Bra004783.1-P	Field mustard	cytosol, golgi	6.6	17.83
Bra007287.1-P	Field mustard	cytosol	6.24	17.5
Bra012753.1-P	Field mustard	cytosol	7.4	17.26
Bra003910.1-P	Field mustard	cytosol	5.61	16.67
Bra016111.1-P	Field mustard	cytosol	5.88	16.54
Bra022611.1-P	Field mustard	cytosol	6.95	16.39
Bra009201.1-P	Field mustard	nucleus	6.68	15.62
Bra003111.1-P	Field mustard	nucleus	3.21	15.52
Bra021188.1-P	Field mustard	cytosol	6.77	15.29
Bra023416.1-P	Field mustard	nucleus	7.58	13.14
Bra037932.1-P	Field mustard	mitochondrion	6.68	13.04
Bra006202.1-P	Field mustard	nucleus	7.49	12.69

Protein Annotations

MapMan:13.4.4.2.2	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra031445	EnsemblPlants:Bra031445.1	EnsemblPlants:Bra031445.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0006950	GO:GO:0008017	GO:GO:0008150
GO:GO:0008352	GO:GO:0009628	GO:GO:0009651	GO:GO:0009719	GO:GO:0009737	GO:GO:0009987
GO:GO:0016043	GO:GO:0051013	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:Katanin_C-terminal
InterPro:Katanin_bsu1	UniProt:M4ERL9	HAMAP:MF_03022	PFAM:PF00400	PFAM:PF13925	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19845	PANTHER:PTHR19845:SF5	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI000254502B	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:	:

Description

AT1G61210 (E=0.0) | WD-40 repeat family protein / katanin p80 subunit, putative

Coordinates

chrA01:+:17373728..17379886

Molecular Weight (calculated)

122773.0 Da

IEP (calculated)

7.328

GRAVY (calculated)

-0.484

Length

1122 amino acids

Sequence
(BLAST)

0001: MAKRGYKLQE FLAHSANVNC LSIGKKTSRL LITGGDDYKV NLWAIGKPTS LMSLCGHTSA VDSLAFDSAE VLVLGGASSG LIKLWDLEEA KMVRAFTGHR
0101: SSCSAVEFHP FGEFLASGSN DTNLKIWDIR KKGCIQTYKG HTRDINTIKF SPDGRWVVTG GLDNAVKVWD LTAGKLIHDF KFHEGSIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEDTGVR SIKFHPDGRT LFCGLDDGLK VYSWEPVVCH DSVDMGWSTL GDLCISEGKL MGCSYYQNSV GIWVSDISQI
0301: EPYGIGSVDK KECVEKVLSV LDDQSSERVK SGARRSPSPD YETKEIKNIY IDCGNSTVAD KPGSRSTSKV NATSTGQAGD KSFILHGDTG KDSSDSGKES
0401: ITFSKTKPGM LLRPAHVRKT PSKQSVAVQS STPKQSGSDG EKTLDTKTVL DSEQSGRKPF DASDSIIKSI TSKFEKALFP ESPTDETKSM LLKPPRVQRS
0501: PNTKYNETRW AVSVDSENLD SHQSGLEESR DADLPIELAD DRGCNPTEED ASDAIILSKP ERVLTPEKAG DEQKGVESPG GSKESDSVKV VRGVKVVSGR
0601: TRSLVERFER RETITPSEED KAASAATVQS TNSVEEEAKS AFIPAVSTTP TQVMAVKLDE ATNSTTVEAP VVSTRRPRSI PARVMPVVLG RDTNMSTDVP
0701: SVTLTGPDRT SAANLTSDES SVTSTRQSRS SPAPVMPVVI NQTTKMKSDD PPVTSTRPDR SSAANLTSDE SPVSSRRQAT SPAPVTPLIL NRSRSTNMKP
0801: DEPHVIPRRP LRSSSTRIRP VMLNQTTNTH DERPVQSTRS ARTSPARVIP MKLSQADDIP SYELPVALTR SARNSPVRAI PSKINQANNV TSDASHIRSR
0901: HRFSPTQTLA TPSVIDQMAD MTLDEAHITQ TQPDYDISKQ KEDPRISERE NEDDISETLM QTHNEVLNTL QSRLTKLQIV RHFWERNDIK GAIMALKKLS
1001: DHSVQADVIS ILTDKPEILT LDLFSQLAPV LTGLLGSRTE RPVSVSLEML LKLVAVFGAV VQSNVSARRS VGVDLHAEER LQICQSCSAE LQKVQKILPL
1101: LTRRGGLIAR KAQELNLVLQ TP

Best Arabidopsis Sequence Match ( AT1G61210.2 )
(BLAST)

0001: MAKRGYKLQE FLAHSANVNC LSIGKKTSRL FITGGDDYKV NLWAIGKPTS LMSLCGHTSA VDSVAFDSAE VLVLAGASSG VIKLWDVEEA KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDCGNSAVAH KSGSLSTPAT STGQAGDNKS LVVHSVVPRD SDIGKDSSDS
0401: GKESITFSKT KPGMLLRPAY VRKTPTKFDE TKKQSVAVGY LKKSGLDGEK KLDTETAFDS EMSGRNPYDA DDSIIKSITN KFEQALLPES PTDEAKCMLL
0501: KPPRVQRSPS TKYNEARWAT STDSGALDSK KNGLESSRDM DLPTGLRDDR GSNPCEEDIE NKSISSRSER VLSPEKAGDE LKSLESPGGS KESKSVKVVR
0601: GVKVVSGRTR SLVERFERGE KITHSEDKAA SATVVHSSNS VEEEPLTASV QTVSMMPTQV MPVKLDQATN STTVDVPVLS TRRTKSTPVR VMPVVLGRDT
0701: SMATDTPPVT STRPDRTSAT NLTSDVSGVT SKRQTRTSPA PVMPMILNQT TKMKSDEPSI TSTWPDRTSA TDLTSDVSGV ISSRQTRTSP APVMPMKLNQ
0801: KTKIKSDEPP ITSTRPDRPS ATNLTSDESP VTSTRQAKTS PAPVTPVILN QRQTTNMKSD EPPVISTRPL RTSSARVMPV ILNQASTTYD ERPLSSSRSA
0901: RTSPARIMPM KLNQADNMPS YEPPVALTRS ARNSPARVIP VKLNQATNVT ADASHIRSRQ RFSPTQTLAT PAVFDQVTDM TLDETTKTQQ SSDILTQKEE
1001: PQISGREDDG DIWEILMRTH SEVLNTLQSR LTKLQIVRHF WERSDIKGAI AALRKLSDHS VQADVINILT DKTEILTLDL FSQLAPVLTG LLGSKTERPV
1101: NVSLEMLLKL VAVFGTVIQS TVSARRVVGV DLHAEERLQI CQSCSAELQK VQKILPLLTR RGGLIARKAQ ELNLVLQTP

Arabidopsis Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4HTH8]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.