Factsheet for Bra005990.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY60225	Canola	cytosol	93.04	94.49
CDX81101	Canola	cytosol	93.51	94.29
AT5G08390.1	Thale cress	cytosol	85.02	85.94
Bra009683.1-P	Field mustard	cytosol	72.29	67.66
GSMUA_Achr3P27210_001	Banana	golgi	35.02	62.79
VIT_10s0071g01150.t01	Wine grape	cytosol	58.84	62.61
KRG93160	Soybean	cytosol	54.83	61.26
KRH56498	Soybean	cytosol	54.48	60.87
Solyc02g021360.2.1	Tomato	cytosol	54.48	57.89
GSMUA_Achr4P05370_001	Banana	golgi, mitochondrion	51.3	54.85
Solyc04g008720.2.1	Tomato	cytosol	51.53	53.95
PGSC0003DMT400065114	Potato	cytosol	51.42	53.76
KXG27434	Sorghum	cytosol	51.3	47.28
Zm00001d026621_P006	Maize	cytosol	50.47	47.03
Zm00001d001828_P033	Maize	cytosol	50.94	46.85
TraesCS2A01G592600.1	Wheat	cytosol	51.06	46.81
TraesCS2D01G561900.1	Wheat	cytosol	51.06	46.81
TraesCS2B01G591600.2	Wheat	cytosol	50.24	46.46
Os04t0677700-00	Rice	cytosol	47.05	44.83
GSMUA_Achr9P23740_001	Banana	golgi	50.47	40.84
Bra031445.1-P	Field mustard	cytosol	39.39	29.77
Bra019610.1-P	Field mustard	plastid	9.2	24.61
Bra018529.1-P	Field mustard	cytosol	8.14	21.17
Bra003387.1-P	Field mustard	cytosol	8.14	20.54
Bra004783.1-P	Field mustard	cytosol, golgi	8.49	17.35
Bra016111.1-P	Field mustard	cytosol	8.14	17.29
Bra024323.1-P	Field mustard	cytosol	6.01	17.17
Bra003910.1-P	Field mustard	cytosol	7.43	16.67
Bra003111.1-P	Field mustard	nucleus	4.36	15.95
Bra022611.1-P	Field mustard	cytosol	8.73	15.55
Bra012753.1-P	Field mustard	cytosol	8.73	15.38
Bra007287.1-P	Field mustard	cytosol	7.08	15.0
Bra023416.1-P	Field mustard	nucleus	11.2	14.68
Bra009201.1-P	Field mustard	nucleus	8.14	14.38
Bra006202.1-P	Field mustard	nucleus	10.85	13.9
Bra021188.1-P	Field mustard	cytosol	7.9	13.48
Bra037932.1-P	Field mustard	mitochondrion	8.49	12.52

Protein Annotations

MapMan:13.4.4.2.2	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra005990	EnsemblPlants:Bra005990.1	EnsemblPlants:Bra005990.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005737	GO:GO:0005856	GO:GO:0005874	GO:GO:0008017	GO:GO:0008150	GO:GO:0008352
GO:GO:0009987	GO:GO:0016043	GO:GO:0051013	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
InterPro:Katanin_C-terminal	InterPro:Katanin_bsu1	UniProt:M4CP52	HAMAP:MF_03022	PFAM:PF00400	PFAM:PF13925
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19845	PANTHER:PTHR19845:SF5
SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000253F74F	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	SEG:seg	:	:	:

Description

AT5G08390 (E=2e-222) | FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: CUL4 RING ubiquitin ligase complex; EXPRESSED IN: 22 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: WD40 repeat-like (InterPro:IPR011046), WD40 repeat, region (InterPro:IPR017986), WD40/YVTN repeat-like (InterPro:IPR015943), WD40 repeat (InterPro:IPR001680); BEST Arabidopsis thaliana protein match is: transducin family protein / WD-40 repeat family protein (TAIR:AT5G23430.1); Has 84267 Blast hits to 30722 proteins in 748 species: Archae - 68; Bacteria - 7813; Metazoa - 39755; Fungi - 16342; Plants - 8110; Viruses - 6; Other Eukaryotes - 12173 (source: NCBI BLink).

Coordinates

chrA03:+:1515385..1519906

Molecular Weight (calculated)

93175.8 Da

IEP (calculated)

8.482

GRAVY (calculated)

-0.480

Length

848 amino acids

Sequence
(BLAST)

001: MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR KLVTGGEDHK VNLWAIGKPN TILSLQGHTS GVDSVTFDAS EGLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVNFH PFGEFFASGS RDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNVVKVW DLTAGKLLHE FKSHEGQIQS LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSGGTETTGV RCLTFNPDGK SVLCGLHESL KIFSWEPIRC HDGVDVGWSN LSDMNVHEGK LLGCSYNQNC VGVWVVDLSR
301: TEPMSGGTTQ SNFHPERVSG SGRDQPVLND NSSKVILRNG SQKMNPSSKE TKSLGRLSVS QNPDPSPKET KSTGRSSVSQ SSDPLIRESK PLGRLSVTHS
401: SDAVKESLTS SLKSHFLVCL LFAEATGSTS GSPRRVTLTS SPKVASGVST VVSTAAASKR NFNLKANLRT VNKDDFSPVI VPRTDPIIEQ AVESRAELDI
501: IGRTMPYSLQ SKAADSRRLS SIRNEPDLPT DSLLERSQSQ PIEPSNLQDG NTFTSEESGA WDTAERKNKD NRYRGFGRFN SRSLLRSPPR NHDENSDSNG
601: FNGNRDQSPI ESRRGGRLHS LAQYRERRGR VFNSEGGHVS SSSGGNMTTP NIRPSNMVNQ RGNHVPVDEG ITSDSEEDKA AEVMGQHDQF VSSMQSRLAK
701: LQVVRRYWER NDVKNSISSI EKMADNAVVA DVLVIITERS EVLTLDTCTS LLPLMSALLG SNIDRHLSVC LDLLLKLVRM YGSQIYSSLS APSSVGVDIE
801: AEQRMERYSR CFVELEKIKA CLPSLERRGG LVAKTIHELN LIFQEVSS

Best Arabidopsis Sequence Match ( AT5G08390.1 )
(BLAST)

001: MNTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EGLVAAGAAS GTIKLWDLEE AKVVRTLTGH
101: RSNCVSVNFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWIVS GGEDNVVKVW DLTAGKLLHE FKSHEGKIQS LDFHPHEFLL
201: ATGSADKTVK FWDLETFELI GSGGTETTGV RCLTFNPDGK SVLCGLQESL KIFSWEPIRC HDGVDVGWSN LSDMNVHEGK LLGCSYNQNC VGVWVVDLSR
301: TEPMSGGATQ SNSHPEKTSG SGRDQAGLND NSSKVILGKL PGSQKVDPLL KETKSLGKLS VSQNSDPLPK DTKSTGRSSV SQSSDPLVKE PKPLGRFSAT
401: HSSDTVKESR TLSSTGSVSD SPHRVTLTSA PKSASGISTV VPNAAASKRN FGKANPKANP PVVNKEDYFP VIVPRTEPII EQASESRAEL DIIGRTMPYS
501: LQSKAADSRR LSSSRNEPDL PTSSLLERSQ SQPIEPITLQ DGNTYPSDEG GSWDTAERTN KESKCRVFGR FNSRSLVRSP PRNHDENSDL ISYNANRDSS
601: PTESRKGGRL HSLVLNRERR GRFSNFEGPV SSSSGGNMTA PNSRPSNMLK QRGNHVPVDQ GITSASEEDI VADIMGQHDQ FVSSMHSRLA KLQVVRRYWE
701: RNDIKNSISS IEKMADNAVI ADVLLIVNER PEILTLDTCT SLLPLLTALL GSNMDSHLSV CLDLLLKLVR MYGSQIYSSL SAPSSVGVDI EAEQRMERYS
801: CCFVEFEKIK ACLPSLARRG NLVAKTLHEL NLTFQEVSS

Arabidopsis Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4KB17]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.