Factsheet for Bra022611.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDY27046	Canola	cytosol	100.0	100.0
CDX84790	Canola	cytosol	99.79	99.79
CDX96156	Canola	cytosol	98.74	98.74
Bra003111.1-P	Field mustard	nucleus	44.54	91.38
CDY50395	Canola	cytosol, extracellular, golgi, mitochondrion	55.04	82.13
VIT_13s0064g00360.t01	Wine grape	nucleus	78.36	78.2
KRH70275	Soybean	nucleus	78.57	77.92
Solyc03g112530.2.1	Tomato	nucleus	78.57	77.75
PGSC0003DMT400046634	Potato	cytosol	78.57	77.75
KRH08668	Soybean	nucleus	77.73	77.08
GSMUA_Achr3P29050_001	Banana	nucleus	77.31	76.99
Bra009201.1-P	Field mustard	nucleus	75.21	74.58
VIT_13s0064g00330.t01	Wine grape	extracellular	14.71	53.44
Bra019610.1-P	Field mustard	plastid	19.54	29.34
Bra018529.1-P	Field mustard	cytosol	18.49	26.99
Bra003387.1-P	Field mustard	cytosol	17.23	24.4
Bra024323.1-P	Field mustard	cytosol	13.24	21.21
Bra004783.1-P	Field mustard	cytosol, golgi	17.44	20.0
Bra016111.1-P	Field mustard	cytosol	15.97	19.05
Bra003910.1-P	Field mustard	cytosol	15.13	19.05
Bra007287.1-P	Field mustard	cytosol	13.66	16.25
Bra012753.1-P	Field mustard	cytosol	15.76	15.59
Bra021188.1-P	Field mustard	cytosol	15.55	14.89
Bra037932.1-P	Field mustard	mitochondrion	15.55	12.87
Bra023416.1-P	Field mustard	nucleus	17.44	12.83
Bra006202.1-P	Field mustard	nucleus	16.6	11.93
Bra005990.1-P	Field mustard	cytosol	15.55	8.73
Bra009683.1-P	Field mustard	cytosol	15.97	8.39
Bra031445.1-P	Field mustard	cytosol	16.39	6.95
Os01t0531300-00	Rice	endoplasmic reticulum, extracellular	0.63	1.35

Protein Annotations

MapMan:17.1.2.2.1.12	Gene3D:2.130.10.10	EnsemblPlantsGene:Bra022611	EnsemblPlants:Bra022611.1	EnsemblPlants:Bra022611.1-P	InterPro:G-protein_beta_WD-40_rep
GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623
GO:GO:0005634	GO:GO:0005730	InterPro:Gprotein_B	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
UniProt:M4E1G3	InterPro:NLE	PFAM:PF00400	PFAM:PF08154	PRINTS:PR00319	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19848	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0002546DF5	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf

Description

AT5G52820 (E=3e-271) | WD-40 repeat family protein / notchless protein, putative

Coordinates

chrA02:-:8549223..8551810

Molecular Weight (calculated)

52979.0 Da

IEP (calculated)

7.940

GRAVY (calculated)

-0.363

Length

476 amino acids

Sequence
(BLAST)

001: MNMETSQAGM GNNTVMCLLT DPEGTNLGSA MYIPQTAGPL QLTQLVNRFL NNEEMLPYSF YVSDEELLVP VGTYLENNNV SVETVLTIVY QQQAVFRIRP
101: VNRCSQTIAG HAEAVLCVSF SPDGKQLASG SGDTTVRLWD LYTETPLFTC KGHRNWVLSI AWSPDGKHLV SGSKSGEICC WNPKKGELDG NPLTGHKKWI
201: TGISWEPVHL SSPCRRFVTS SKDGDARIWD VTLKKTLICL SGHTLAVTCV KWGGDGIIYT GSQDCTIKMW ETTQGKLIRE LKGHGHWVNS LALSTEYVLR
301: TGAFDHTGRQ YPPNEEMKKA LERYNQAKGD SPERLVSGSD DFTMFLWEPS VSKQPKKRLT GHQQLVNHVY FSPDGKWIAS ASFDRSVRLW NGVTGQFVTA
401: FRGHVGPVYQ VSWSADSRLL LSGSKDSTLK IWEIRTRTLK QDLPGHADEV FAVDWSPDGE KVVSGGKDKV LKLWKG

Best Arabidopsis Sequence Match ( AT5G52820.1 )
(BLAST)

001: MTMMDTDEGK TVMCLLTDPE GTHLGSAMYI PQKAGPLQLT QLVNRFLDNE EMLPYSFYVS DEELLVPVGT YLEKNKVSVE KVLTIVYQQQ AVFRIRPVNR
101: CSQTIAGHAE AVLCVSFSPD GKQLASGSGD TTVRLWDLYT ETPLFTCKGH KNWVLTVAWS PDGKHLVSGS KSGEICCWNP KKGELEGSPL TGHKKWITGI
201: SWEPVHLSSP CRRFVTSSKD GDARIWDITL KKSIICLSGH TLAVTCVKWG GDGIIYTGSQ DCTIKMWETT QGKLIRELKG HGHWINSLAL STEYVLRTGA
301: FDHTGRQYPP NEEKQKALER YNKTKGDSPE RLVSGSDDFT MFLWEPSVSK QPKKRLTGHQ QLVNHVYFSP DGKWIASASF DKSVRLWNGI TGQFVTVFRG
401: HVGPVYQVSW SADSRLLLSG SKDSTLKIWE IRTKKLKQDL PGHADEVFAV DWSPDGEKVV SGGKDRVLKL WKG

Arabidopsis Description

NLE1NLE [Source:UniProtKB/TrEMBL;Acc:A0A178UNZ3]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.