Factsheet for Bra003387.1-P

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
EpiLoc:	cytosol
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
CDX67810	Canola	cytosol	99.11	92.76
KRH06660	Soybean	nucleus	86.61	84.35
KRG94875	Soybean	nucleus	86.31	84.06
Solyc03g059100.1.1	Tomato	nucleus	80.95	83.44
VIT_05s0094g00800.t01	Wine grape	cytosol	85.42	83.43
PGSC0003DMT400067694	Potato	cytosol	81.85	80.88
Zm00001d046930_P001	Maize	cytosol, extracellular, plasma membrane	76.79	79.14
Zm00001d036709_P001	Maize	cytosol	76.49	78.83
GSMUA_Achr3P04370_001	Banana	cytosol	75.3	78.57
EER90141	Sorghum	plastid	77.38	75.8
TraesCS7B01G406900.1	Wheat	cytosol, plastid	77.08	74.86
TraesCS7A01G499900.1	Wheat	nucleus	76.79	74.57
Os06t0653800-01	Rice	nucleus	75.89	74.34
TraesCS7D01G486800.1	Wheat	cytosol, plastid	76.49	74.28
HORVU7Hr1G111780.2	Barley	cytosol, plastid	76.49	74.28
Bra004783.1-P	Field mustard	cytosol, golgi	88.1	71.33
Bra019610.1-P	Field mustard	plastid	25.89	27.44
Bra018529.1-P	Field mustard	cytosol	26.49	27.3
Bra024323.1-P	Field mustard	cytosol	23.21	26.26
Bra003111.1-P	Field mustard	nucleus	12.5	18.1
Bra022611.1-P	Field mustard	cytosol	24.4	17.23
Bra016111.1-P	Field mustard	cytosol	19.64	16.54
Bra009201.1-P	Field mustard	nucleus	22.62	15.83
Bra003910.1-P	Field mustard	cytosol	16.96	15.08
Bra007287.1-P	Field mustard	cytosol	16.37	13.75
Bra012753.1-P	Field mustard	cytosol	18.75	13.1
Bra037932.1-P	Field mustard	mitochondrion	21.73	12.7
Bra021188.1-P	Field mustard	cytosol	18.45	12.47
Bra023416.1-P	Field mustard	nucleus	21.73	11.28
Bra006202.1-P	Field mustard	nucleus	22.02	11.18
Bra009683.1-P	Field mustard	cytosol	22.02	8.17
Bra005990.1-P	Field mustard	cytosol	20.54	8.14
Bra031445.1-P	Field mustard	cytosol	22.02	6.6

Protein Annotations

MapMan:16.4.1.4.3	Gene3D:2.130.10.10	InterPro:Apc4_WD40_dom	EnsemblPlantsGene:Bra003387	EnsemblPlants:Bra003387.1	EnsemblPlants:Bra003387.1-P
InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	UniProt:M4CGQ4	PFAM:PF00400	PFAM:PF12894	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44006	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000254177C
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:

Description

AT2G43770 (E=7e-183) | transducin family protein / WD-40 repeat family protein

Coordinates

chrA07:-:12955147..12956157

Molecular Weight (calculated)

37341.4 Da

IEP (calculated)

6.976

GRAVY (calculated)

-0.380

Length

336 amino acids

Sequence
(BLAST)

001: MDIVNRDNEP MEWSTVPYNA PQGPVSNGKQ RTSSLEAPIM LLSGHQSAIY TMQFNPAGTV IASGSHDREI FLWRVHGDCK NFMVLKGHKN AILDLHWTSD
101: GLQIVSASPD KTLRAWDVET GKQVKKMAEH SSFVNSCCPS RRGLPLIVSG SDDGTAKLWD MRQRGAVQTF PDKYQITAVS FSDAADKIFT GGVDNDVKVW
201: DLRKGEAIMT LEGHQDTITG MSLSPDGSYL LTNAMDCKLC VWDMRPYAPQ NRCVKIFEGH QHNFEKNLLK CAWSPDGSKV TAGSADRMVH IWDTTSRRIL
301: YKLPGHNGSV NECVFHPHEP IIGSCSSDKL IYLGEI

Best Arabidopsis Sequence Match ( AT2G43770.1 )
(BLAST)

001: MEIMSRENET ALSGPRPMEW STVPHSASQG PGPNGKNRTS SLEAPIMLLS GHPSAVYTMK FNPAGTLIAS GSHDREIFLW RVHGDCKNFM VLKGHKNAIL
101: DLHWTSDGSQ IVSASPDKTV RAWDVETGKQ IKKMAEHSSF VNSCCPTRRG PPLIISGSDD GTAKLWDMRQ RGAIQTFPDK YQITAVSFSD AADKIFTGGV
201: DNDVKVWDLR KGEATMTLEG HQDTITGMSL SPDGSYLLTN GMDNKLCVWD MRPYAPQNRC VKIFEGHQHN FEKNLLKCSW SPDGTKVTAG SSDRMVHIWD
301: TTSRRTIYKL PGHTGSVNEC VFHPTEPIIG SCSSDKNIYL GEI

Arabidopsis Description

At2g43770 [Source:UniProtKB/TrEMBL;Acc:O22826]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.