Factsheet for VIT_05s0094g00800.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 3
plastid 3

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH06660	Soybean	nucleus	89.83	89.57
KRG94875	Soybean	nucleus	89.83	89.57
Solyc03g059100.1.1	Tomato	nucleus	83.43	88.04
PGSC0003DMT400067694	Potato	cytosol	86.92	87.94
Bra003387.1-P	Field mustard	cytosol	83.43	85.42
AT2G43770.1	Thale cress	cytosol	84.59	84.84
GSMUA_Achr3P04370_001	Banana	cytosol	78.78	84.16
Zm00001d046930_P001	Maize	cytosol, extracellular, plasma membrane	77.91	82.21
Zm00001d036709_P001	Maize	cytosol	77.62	81.9
EER90141	Sorghum	plastid	80.81	81.05
CDX67810	Canola	cytosol	83.72	80.22
Os06t0653800-01	Rice	nucleus	79.07	79.3
TraesCS7B01G406900.1	Wheat	cytosol, plastid	78.49	78.03
TraesCS7A01G499900.1	Wheat	nucleus	78.2	77.75
HORVU7Hr1G111780.2	Barley	cytosol, plastid	77.91	77.46
TraesCS7D01G486800.1	Wheat	cytosol, plastid	77.91	77.46
Bra004783.1-P	Field mustard	cytosol, golgi	82.56	68.43
CDX79802	Canola	cytosol, golgi	82.56	68.43
CDY17912	Canola	cytosol, golgi	82.27	67.87
CDX98392	Canola	endoplasmic reticulum, extracellular	82.56	64.11
VIT_07s0151g00960.t01	Wine grape	cytosol	27.03	29.52
VIT_07s0205g00150.t01	Wine grape	cytosol	24.42	26.84
VIT_09s0002g01580.t01	Wine grape	cytosol	20.06	23.08
VIT_11s0016g02220.t01	Wine grape	cytosol	22.67	19.85
VIT_18s0164g00020.t01	Wine grape	nucleus	22.38	19.69
VIT_13s0064g00360.t01	Wine grape	nucleus	24.13	17.4
VIT_17s0000g09750.t01	Wine grape	cytosol	24.71	16.41
VIT_13s0064g00330.t01	Wine grape	extracellular	6.1	16.03
VIT_05s0077g02310.t01	Wine grape	cytosol	17.44	12.4
VIT_00s0776g00020.t01	Wine grape	cytosol, mitochondrion, nucleus	18.6	12.28
VIT_13s0019g00220.t01	Wine grape	nucleus	20.35	9.06
VIT_10s0071g01150.t01	Wine grape	cytosol	20.06	8.66
VIT_00s1397g00010.t01	Wine grape	cytosol	5.81	5.9
VIT_00s1406g00010.t01	Wine grape	cytosol, mitochondrion, nucleus	2.91	3.39

Protein Annotations

EntrezGene:100267975	wikigene:100267975	MapMan:16.4.1.4.3	Gene3D:2.130.10.10	ProteinID:CCB49395	ProteinID:CCB49395.1
UniProt:F6HB26	EMBL:FN595507	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EntrezGene:LOC100267975	wikigene:LOC100267975	PFAM:PF00400
PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR44006	SMART:SM00320
SUPFAM:SSF50978	UniParc:UPI00019834C2	ArrayExpress:VIT_05s0094g00800	EnsemblPlantsGene:VIT_05s0094g00800	EnsemblPlants:VIT_05s0094g00800.t01	unigene:Vvi.13077
InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002277631
RefSeq:XP_002277631.1	:	:	:	:	:

Description

No Description!

Coordinates

chr5:-:24119383..24122748

Molecular Weight (calculated)

37995.3 Da

IEP (calculated)

7.717

GRAVY (calculated)

-0.385

Length

344 amino acids

Sequence
(BLAST)

001: MQGFPSENAL SVVGPRPGME LSAVPCTGPR APGANGKQRT SSLESPIMLL AGHQSAIYTM KFNPTGTVIA SGSHEREIFL WYVHGDCKNF MVLKGHKNAI
101: LDLQWTTDGT QIISASPDKT LRAWDVETGK QIKKMAEHSS FVNSCCPSRR GPPLVVSGSD DGTAKLWDMR QRGAIQTFPD KYQITAVSFS DASDKIFTGG
201: IDNDVKVWDL RRNEVTMTLQ GHQDMITGMQ LSPDGSYLLT NGMDCKLCIW DMRPYAPQNR CVKILEGHQH NFEKNLLKCS WSPDGSKVTA GSSDRMVYIW
301: DTTSRRILYK LPGHTGSVNE CVFHPSEPIV GSCSSDKQIY LGEI

Best Arabidopsis Sequence Match ( AT2G43770.1 )
(BLAST)

001: MEIMSRENET ALSGPRPMEW STVPHSASQG PGPNGKNRTS SLEAPIMLLS GHPSAVYTMK FNPAGTLIAS GSHDREIFLW RVHGDCKNFM VLKGHKNAIL
101: DLHWTSDGSQ IVSASPDKTV RAWDVETGKQ IKKMAEHSSF VNSCCPTRRG PPLIISGSDD GTAKLWDMRQ RGAIQTFPDK YQITAVSFSD AADKIFTGGV
201: DNDVKVWDLR KGEATMTLEG HQDTITGMSL SPDGSYLLTN GMDNKLCVWD MRPYAPQNRC VKIFEGHQHN FEKNLLKCSW SPDGTKVTAG SSDRMVHIWD
301: TTSRRTIYKL PGHTGSVNEC VFHPTEPIIG SCSSDKNIYL GEI

Arabidopsis Description

At2g43770 [Source:UniProtKB/TrEMBL;Acc:O22826]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.