Factsheet for VIT_17s0000g09750.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 3
cytosol 2
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57171	Soybean	cytosol	76.06	76.65
PGSC0003DMT400039207	Potato	cytosol	74.71	76.03
KRH03886	Soybean	nucleus	75.1	75.68
Solyc03g111740.2.1	Tomato	cytosol	69.11	74.27
CDY05801	Canola	cytosol	67.76	69.92
AT5G50230.1	Thale cress	cytosol	67.95	69.16
GSMUA_Achr8P28660_001	Banana	cytosol	42.86	65.88
GSMUA_Achr2P06000_001	Banana	cytosol	59.07	64.56
CDY05802	Canola	mitochondrion	69.11	62.26
Bra037932.1-P	Field mustard	mitochondrion	68.34	61.57
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	11.0	60.64
Zm00001d033994_P002	Maize	mitochondrion, nucleus	53.28	54.44
Os03t0746600-01	Rice	nucleus	53.47	54.21
TraesCS5D01G394200.1	Wheat	cytosol	50.39	50.58
HORVU5Hr1G094540.7	Barley	cytosol, mitochondrion, nucleus	49.81	50.1
KXG37566	Sorghum	plastid	52.9	47.65
VIT_07s0205g00150.t01	Wine grape	cytosol	15.44	25.56
VIT_07s0151g00960.t01	Wine grape	cytosol	15.44	25.4
VIT_09s0002g01580.t01	Wine grape	cytosol	14.48	25.08
VIT_05s0094g00800.t01	Wine grape	cytosol	16.41	24.71
VIT_18s0164g00020.t01	Wine grape	nucleus	15.06	19.95
VIT_11s0016g02220.t01	Wine grape	cytosol	15.06	19.85
VIT_13s0064g00360.t01	Wine grape	nucleus	16.6	18.03
VIT_00s0776g00020.t01	Wine grape	cytosol, mitochondrion, nucleus	14.29	14.2
VIT_13s0064g00330.t01	Wine grape	extracellular	3.47	13.74
VIT_05s0077g02310.t01	Wine grape	cytosol	12.74	13.64
VIT_10s0071g01150.t01	Wine grape	cytosol	14.29	9.28
VIT_13s0019g00220.t01	Wine grape	nucleus	12.36	8.28
VIT_00s1397g00010.t01	Wine grape	cytosol	2.9	4.42
VIT_00s1406g00010.t01	Wine grape	cytosol, mitochondrion, nucleus	2.12	3.73

Protein Annotations

EntrezGene:100245008	wikigene:100245008	Gene3D:2.130.10.10	MapMan:35.1	InterPro:Autophagy-rel_prot_16	ProteinID:CCB42917
ProteinID:CCB42917.1	ncoils:Coil	UniProt:F6GTQ1	EMBL:FN594950	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000045
GO:GO:0000421	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622
GO:GO:0005623	GO:GO:0005737	GO:GO:0005773	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056
GO:GO:0009987	GO:GO:0016020	GO:GO:0016043	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986
EntrezGene:LOC100245008	wikigene:LOC100245008	PFAM:PF00400	PFAM:PF08614	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19878	PANTHER:PTHR19878:SF8	SMART:SM00320	SUPFAM:SSF50978
TIGR:TC58986	TIGR:TC60457	UniParc:UPI000210A8C9	ArrayExpress:VIT_17s0000g09750	EnsemblPlantsGene:VIT_17s0000g09750	EnsemblPlants:VIT_17s0000g09750.t01
unigene:Vvi.17707	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
RefSeq:XP_002278503	RefSeq:XP_002278503.1	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr17:+:11615356..11620323

Molecular Weight (calculated)

57189.8 Da

IEP (calculated)

6.594

GRAVY (calculated)

-0.298

Length

518 amino acids

Sequence
(BLAST)

001: MENRGKEKEL SQDEVAVDAI KHALKALRKR HLLEEGAHAP AIVALSKPFI YQGSEWKDKA ENLEVELQQC YRAQARLSEQ LVVEVAECRA SKALVQEKEA
101: IINDIQNELT KTRDECLQLK VIVEEKTKAL ELVMSENQEL KAQLQEMTVK AKNIEAENKM LIDRWMLQKM QEAEHLNEAN ALYQDFKDQL KASGIAQLAR
201: QQVDGVVRQS EEGAQYYGES TVPNTCKHRI HAHEGGCAAI LFEYNSGNLI SGGHDRAVKM WDTNTGSLTR TLYGCVGSVL DLAITHDNRS IIAASSSNNL
301: CVWDVNSGRI RHTLTGHMDK VCSVDVSKIS SRHVASAAYD RTIKVWDLQK GYCINTIIFH SNCNALCFST DGQTICSGHV DGNLRLWDIQ TGKLLSEVAA
401: HSLAITSISL SRNGSVVLTS GRDNLHNLFD MRSLEVCGTL RANGNRVASN WSRSCISADD NYVAAGSTDG SVHIWSILTA EIVSTLKEHT ASVLSCSWSG
501: LGKPLASSDK SGIVYTWT

Best Arabidopsis Sequence Match ( AT5G50230.1 )
(BLAST)

001: MVQEEKAMEA INDALRALRK RHLLEEGAHA PAISALSKPL ISQGSEWKEK TEKLETELQQ CYKAQSRLSE QLVIEVAESR TSKAILQEKE LLINDLQKEL
101: TQRREDCTRL QEELEEKTKT VDVLIAENLE IRSQLEEMTS RVQKAETENK MLIDRWMLQK MQDAERLNEA NDLYEEMLAK LKANGLETLA RQQVDGIVRR
201: NEDGTDHFVE STIPSTCANR IHAHEGGCGS IVFEYNSGTL FTGGQDRAVK MWDTNSGTLI KSLYGSLGNI LDMAVTHDNK SVIAATSSNN LFVWDVSSGR
301: VRHTLTGHTD KVCAVDVSKF SSRHVVSAAY DRTIKLWDLH KGYCTNTVLF TSNCNAICLS IDGLTVFSGH MDGNLRLWDI QTGKLLSEVA GHSSAVTSVS
401: LSRNGNRILT SGRDNVHNVF DTRTLEICGT LRASGNRLAS NWSRSCISPD DDYVAAGSAD GSVHVWSLSK GNIVSILKEQ TSPILCCSWS GIGKPLASAD
501: KNGYVCTWT

Arabidopsis Description

ATG16Autophagy-related protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.