CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

nucleus 4
cytosol 1
mitochondrion 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus
BaCelLo:	nucleus
MultiLoc:	cytosol
Plant-mPloc:	nucleus
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH57171	Soybean	cytosol	95.33	95.33
VIT_17s0000g09750.t01	Wine grape	cytosol	75.68	75.1
PGSC0003DMT400039207	Potato	cytosol	73.15	73.87
CDY05801	Canola	cytosol	71.98	73.71
AT5G50230.1	Thale cress	cytosol	72.37	73.08
Solyc03g111740.2.1	Tomato	cytosol	68.09	72.61
GSMUA_Achr8P28660_001	Banana	cytosol	44.55	67.95
GSMUA_Achr2P06000_001	Banana	cytosol	60.31	65.4
CDY05802	Canola	mitochondrion	72.96	65.22
Bra037932.1-P	Field mustard	mitochondrion	72.76	65.04
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	10.51	57.45
Zm00001d033994_P002	Maize	mitochondrion, nucleus	56.03	56.8
Os03t0746600-01	Rice	nucleus	56.23	56.56
TraesCS5D01G394200.1	Wheat	cytosol	51.17	50.97
HORVU5Hr1G094540.7	Barley	cytosol, mitochondrion, nucleus	50.58	50.49
KXG37566	Sorghum	plastid	55.64	49.74
KRH59511	Soybean	cytosol, nucleus	15.37	26.33
KRH43376	Soybean	nucleus	15.37	24.61
KRH32024	Soybean	cytosol	15.18	24.45
KRH71413	Soybean	nucleus	14.98	24.06
KRG94875	Soybean	nucleus	16.15	24.06
KRH21524	Soybean	cytosol	10.51	24.0
KRH06660	Soybean	nucleus	15.95	23.77
KRH50874	Soybean	nucleus	14.01	21.88
KRH02239	Soybean	nucleus	13.81	21.45
KRH35009	Soybean	cytosol	5.25	19.57
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	14.4	18.93
KRH70275	Soybean	nucleus	15.76	16.88
KRH08668	Soybean	nucleus	15.76	16.88
KRH37298	Soybean	cytosol	12.06	16.36
KRH55267	Soybean	cytosol	4.47	16.2
KRH35010	Soybean	nucleus	4.47	14.29
KRH37088	Soybean	nucleus	12.65	13.63
KRH12069	Soybean	nucleus	12.45	13.45
KRH20528	Soybean	cytosol	15.76	10.41
KRH56498	Soybean	cytosol	14.4	9.75
KRG93160	Soybean	cytosol	14.4	9.75
KRH20750	Soybean	nucleus	13.42	9.64
KRH13395	Soybean	nucleus	13.23	9.52
KRH10790	Soybean	cytosol	14.01	8.73
KRH49977	Soybean	cytosol	10.51	7.88
KRH21526	Soybean	cytosol, peroxisome	3.31	2.84

Protein Annotations

EntrezGene:100806054	Gene3D:2.130.10.10	MapMan:35.1	EMBL:ACUP02010365	InterPro:Apc4_WD40_dom	InterPro:Autophagy-rel_prot_16
ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	EnsemblPlantsGene:GLYMA_17G126200	GO:GO:0000045	GO:GO:0000421	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737
GO:GO:0005773	GO:GO:0008150	GO:GO:0008152	GO:GO:0009056	GO:GO:0009987	GO:GO:0016020
GO:GO:0016043	UniProt:I1MUK8	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	EnsemblPlants:KRH03886
ProteinID:KRH03886	ProteinID:KRH03886.1	ProteinID:KRH03887.1	ProteinID:KRH03888.1	ProteinID:KRH03889.1	PFAM:PF00400
PFAM:PF08614	PFAM:PF12894	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19878	PANTHER:PTHR19878:SF8	SMART:SM00320	SUPFAM:SSF50978	UniParc:UPI000233E669	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	:	:

Description

hypothetical protein

Coordinates

chr17:+:10054533..10058177

Molecular Weight (calculated)

56858.5 Da

IEP (calculated)

6.865

GRAVY (calculated)

-0.330

Length

514 amino acids

Sequence
(BLAST)

001: MAKARKSQEE IASEAIKHAL KALRKRHLLE EAAHAPTVLA LSRPIVSQGS EWKEKAENLQ MELQQCYKAQ SRLSEQLVVE VAESRASKTS LQEKENALAD
101: LQKELTELRD ECSQLKVDLE EKIKSLELVV SENSELKAQL EQMTTKANKA EAENKMLIDR WMLEKMKDAE RLNEANTLYE EMVEKLRASG LEQLARQQVD
201: GIVRRSEEGA EFFFDSNIPS TCKYRLRAHE GGCASMLFEY NSSKLITGGQ DRLVKMWDAN TGSLSSTLHG CLGSVLDLTI THDNQSVIAA SSSNNLYVWD
301: VNSGRVRHTL TGHTDKVCAV DVSKISSRHV VSAAYDRTIK VWDLVKGYCT NTVIFRSNCN SLSFSMDGQT IFSGHVDGNL RLWDIQTGKL LSEVAAHSLA
401: VTSLSLSRNG NVVLTSGRDN LHNLFDVRSL EVCGTLKAMG NRVASNWSRS CISPDDNHVA AGSADGSVYI WSISKGDIVS TLKEHTSSVL CCRWSGIAKP
501: LASADKNGIV CVWT

Best Arabidopsis Sequence Match ( AT5G50230.1 )
(BLAST)

001: MVQEEKAMEA INDALRALRK RHLLEEGAHA PAISALSKPL ISQGSEWKEK TEKLETELQQ CYKAQSRLSE QLVIEVAESR TSKAILQEKE LLINDLQKEL
101: TQRREDCTRL QEELEEKTKT VDVLIAENLE IRSQLEEMTS RVQKAETENK MLIDRWMLQK MQDAERLNEA NDLYEEMLAK LKANGLETLA RQQVDGIVRR
201: NEDGTDHFVE STIPSTCANR IHAHEGGCGS IVFEYNSGTL FTGGQDRAVK MWDTNSGTLI KSLYGSLGNI LDMAVTHDNK SVIAATSSNN LFVWDVSSGR
301: VRHTLTGHTD KVCAVDVSKF SSRHVVSAAY DRTIKLWDLH KGYCTNTVLF TSNCNAICLS IDGLTVFSGH MDGNLRLWDI QTGKLLSEVA GHSSAVTSVS
401: LSRNGNRILT SGRDNVHNVF DTRTLEICGT LRASGNRLAS NWSRSCISPD DDYVAAGSAD GSVHVWSLSK GNIVSILKEQ TSPILCCSWS GIGKPLASAD
501: KNGYVCTWT

Arabidopsis Description

ATG16Autophagy-related protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.