CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH20750	Soybean	nucleus	94.82	94.55
VIT_13s0019g00220.t01	Wine grape	nucleus	80.39	74.26
Bra023416.1-P	Field mustard	nucleus	64.15	70.79
Solyc08g067040.2.1	Tomato	nucleus	74.93	70.03
Bra006202.1-P	Field mustard	nucleus	64.85	69.94
AT5G13480.2	Thale cress	nucleus	63.45	68.95
GSMUA_Achr4P29380_001	Banana	nucleus	68.21	68.5
EES04226	Sorghum	nucleus	65.55	65.55
Zm00001d042091_P002	Maize	cytosol, mitochondrion, nucleus, peroxisome, plastid	65.83	65.46
TraesCS5A01G293600.2	Wheat	nucleus	63.45	63.71
TraesCS5D01G300900.1	Wheat	nucleus	63.45	63.53
TraesCS5B01G292800.1	Wheat	nucleus	63.45	63.53
HORVU5Hr1G077690.1	Barley	cytosol, mitochondrion, plastid, vacuole	64.43	61.09
CDY01533	Canola	plastid	12.46	56.33
Os01t0951000-02	Rice	cytosol, mitochondrion, nucleus	19.75	49.82
KRH21524	Soybean	cytosol	7.7	24.44
KRH71413	Soybean	nucleus	10.64	23.75
KRH32024	Soybean	cytosol	10.5	23.51
KRH35009	Soybean	cytosol	4.48	23.19
KRH50874	Soybean	nucleus	10.64	23.1
KRH02239	Soybean	nucleus	10.5	22.66
KRH59511	Soybean	cytosol, nucleus	8.54	20.33
KRG94875	Soybean	nucleus	9.8	20.29
KRH06660	Soybean	nucleus	9.8	20.29
KRH43376	Soybean	nucleus	8.54	19.0
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	9.8	17.9
KRH55267	Soybean	cytosol	3.36	16.9
KRH12069	Soybean	nucleus	11.2	16.81
KRH37088	Soybean	nucleus	11.06	16.56
KRH70275	Soybean	nucleus	10.78	16.04
KRH08668	Soybean	nucleus	10.64	15.83
KRH57171	Soybean	cytosol	9.66	13.42
KRH03886	Soybean	nucleus	9.52	13.23
KRH37298	Soybean	cytosol	6.86	12.93
KRH20528	Soybean	cytosol	13.17	12.08
KRH56498	Soybean	cytosol	12.75	11.99
KRG93160	Soybean	cytosol	12.75	11.99
KRH10790	Soybean	cytosol	13.03	11.27
KRH49977	Soybean	cytosol	10.36	10.8
KRH35010	Soybean	nucleus	1.68	7.45
KRH21526	Soybean	cytosol, peroxisome	5.6	6.68

Protein Annotations

EntrezGene:100791889	MapMan:16.2.1.2.7	Gene3D:2.130.10.10	UniProt:A0A0R0GCH5	EMBL:ACUP02009716	InterPro:G-protein_beta_WD-40_rep
EnsemblPlantsGene:GLYMA_15G236500	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EnsemblPlants:KRH13395	ProteinID:KRH13395	ProteinID:KRH13395.1	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22836	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI000233B8C6	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr15:-:44555747..44577373

Molecular Weight (calculated)

79093.5 Da

IEP (calculated)

8.424

GRAVY (calculated)

-0.769

Length

714 amino acids

Sequence
(BLAST)

001: MMYNDQQHQH QQHQYQQQQQ QQQQPFHQPP GPEFHRGPPP PSHPPPMMRQ GSASSTNLAP EFHHPGPGGP PPPHYDAHSD SHGAKRIRKL TQRKAVDYTS
101: TVVRYMQIRM SQRDSRDRTV LQPTPAAAID MLPAVGYPDN PSTSFAAKFV HTSLNKNRCP INRVLWTPTG RRLITGSQTG EFTLWNGQSF NFEMILQAHD
201: QAIRSMVWSH NDNWMVSGDD GGAIKYWQNN MNNVKANKSA HKESVRDLSF CRTDLKFCSC SDDTTVKVWD FARCQEECSL SGHGWDVKSV DWHPTKSLLV
301: SGGKDNLVKL WDAKTGRELC SFHGHKNTVL CVKWNQNGNW VLTASKDQII KLYDIRAMKE LESFRGHRKD VTTLAWHPFH EEYFVSGSYD GSIFHWLVGH
401: ETPQIEISNA HDNNVWDLAW HPIGYLLCSG SSDHTTKFWC RNRPGDPARD RFNTGMPGYA DQNPVVGRMG GNFTIAEGPT TPGPFAPGLT RNEGTIPGVG
501: VAMPLSIPSL DMPQGEQKQP HPVSMGAPPL PPGPHPSLLN ANQQQPYQQN PQQIPQHQHQ ALPQQMGPLP MPPNMQQLQH PSHSPFPNMP RPPPQMPIGM
601: PGSIPGISSV PTSHPMPMPG PMGMQGAMNQ MGTPMPQGPY VGMNQMHSGS LPTSGGPPLG GFPGNLPNMQ GPSNANYPQG ASFNRPQGGQ MPLMQGYSPY
701: QSGNQSGMPP NAQP

Best Arabidopsis Sequence Match ( AT5G13480.1 )
(BLAST)

001: MYAGGDMHRG SQMPQPPMMR QSSASSTNIN PDYHHPSGPF DPNVDSFGAK RMRKHTQRRA VDYTSTVVRY IQARTWQRDS RDRTTLQPTP AAAVDMLPTV
101: AYSDNPSTSF AAKFVHASLN KNRCSINRVL WTPSGRRLIT GSQSGEFTLW NGQSFNFEMI LQAHDQPIRS MVWSHNENYM VSGDDGGTLK YWQNNMNNVK
201: ANKTAHKESI RDLSFCKTDL KFCSCSDDTT VKVWDFTKCV DESSLTGHGW DVKSVDWHPT KSLLVSGGKD QLVKLWDTRS GRELCSLHGH KNIVLSVKWN
301: QNGNWLLTAS KDQIIKLYDI RTMKELQSFR GHTKDVTSLA WHPCHEEYFV SGSSDGSICH WIVGHENPQI EIPNAHDNSV WDLAWHPIGY LLCSGSNDHT
401: TKFWCRNRPA DNPRDVLMQN QGYNEQGFGR QPDNFQPSEA SPIPGAFVPG LTRNEGTIPG IGIAMPFDAS SQGDHKQPLP GSMALGAPPL PPGPHPSLLG
501: SGQQQGYQQQ QQHQGHPQQM LPMPNMPHHQ LPPSSHMPLH PHHLPRPMQM PPHGHMPPPS MPMSHQMPGS MGMQGGMNPQ MSQSHFMGAP SGVFQGQPNS
601: GGPQMYPQGR GGFNRPQMIP GYNNPFQQQQ QPPLPPGPPP NNNQQHQ

Arabidopsis Description

FYTransducin/WD40 repeat-like superfamily protein [Source:TAIR;Acc:AT5G13480]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.