Factsheet for TraesCS5A01G293600.2

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

plastid 1
cytosol 1
mitochondrion 1
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS5D01G300900.1	Wheat	nucleus	99.3	99.02
TraesCS5B01G292800.1	Wheat	nucleus	99.02	98.74
HORVU5Hr1G077690.1	Barley	cytosol, mitochondrion, plastid, vacuole	94.94	89.64
EES04226	Sorghum	nucleus	82.14	81.79
Zm00001d042091_P002	Maize	cytosol, mitochondrion, nucleus, peroxisome, plastid	81.86	81.06
Os01t0951000-02	Rice	cytosol, mitochondrion, nucleus	29.25	73.5
GSMUA_Achr4P29380_001	Banana	nucleus	65.26	65.26
Bra006202.1-P	Field mustard	nucleus	59.35	63.75
KRH13395	Soybean	nucleus	63.71	63.45
KRH20750	Soybean	nucleus	63.85	63.41
Bra023416.1-P	Field mustard	nucleus	57.24	62.91
AT5G13480.2	Thale cress	nucleus	58.09	62.86
VIT_13s0019g00220.t01	Wine grape	nucleus	66.1	60.8
Solyc08g067040.2.1	Tomato	nucleus	63.01	58.64
CDY01533	Canola	plastid	11.81	53.16
TraesCS1A01G358200.1	Wheat	cytoskeleton, cytosol, nucleus	7.88	25.45
TraesCS2A01G196900.1	Wheat	plastid	11.67	25.08
TraesCS4A01G258000.1	Wheat	cytosol	10.27	22.6
TraesCS6A01G250200.1	Wheat	cytosol	8.58	20.33
TraesCS7A01G499900.1	Wheat	nucleus	9.28	19.08
TraesCS2A01G126700.2	Wheat	cytoskeleton, cytosol, nucleus	9.85	17.63
TraesCS1A01G443600.1	Wheat	cytosol	11.39	17.05
TraesCS3A01G175600.2	Wheat	plastid	9.85	14.64
TraesCS3A01G317500.1	Wheat	cytosol	11.81	10.11
TraesCS1A01G164300.1	Wheat	cytosol	11.11	9.71
TraesCS2A01G592600.1	Wheat	cytosol	12.52	9.62

Protein Annotations

MapMan:16.2.1.2.7	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680
InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR22836	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS5A01G293600	EnsemblPlants:TraesCS5A01G293600.2	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200	SEG:seg

Description

No Description!

Coordinates

chr5A:-:503137379..503145870

Molecular Weight (calculated)

79259.7 Da

IEP (calculated)

9.108

GRAVY (calculated)

-0.735

Length

711 amino acids

Sequence
(BLAST)

001: MMQQQQQQQP LPPPPPQHPP PQPGGGGGDF YRGPLQPPMR QLSAASSTNL APDYAGHPGP QQHHQQQQHQ QQQQQQPFDA YGDNFGAKRM RKPVQRRTVD
101: YTSSLVRYAQ ARMWQRDARD RFTLQPTAAA VLDMLPSVAY PDNPSTSFAG KFVHSSINKN RCSINCVVWT PTGRRLITGS QSGEFTLWNG QSFNFEMILQ
201: AHEQAVRSMI WSHNENWMVT GDDGGAIKYW QSNMNNVKVN KTAHRESVRD LSFCRTDLKF CSCSDDTTVK VWDFARCQEE RSLTGHGWDV KSVDWHPTKS
301: LLASGGKDYL VKLWDAKSGR ELRSFHGHKN IVQCVKWNQN GNWVLTASKD QIIKLYDIRS MKELESFRGH NKDVTALAWH PFHEEYFVSG SYDGGIFHWL
401: VGHEAPQIEI NNAHDNSVWD LAWHPVGYLL SSGGNDHATR FWCRNRPGDL TRDKFNSGQI QGYGDQHSAF AGRFQMPEQT PGPFAGTIPG IGVAMHLVGS
501: DHGEQRPSIP GLPPGPPPLP PGPHPSLLPT GQQQHYQQMP QQQHSQFRPP PPNMPPPAHI LQHQQGPRSS LPQLPSMPGS MPGPSPVNPP LPPMPHPMAM
601: QGSSTQMMPQ MPQHLIGLNQ NHPGSIPPGN MPPMGSFPNG MGNIQGSSGA SGMQNFPMGS MYNRPQGQMA PQGQMSSIPG LGSYQGWAML AFHHRRHSIL
701: RLAVQHHSEI M

Best Arabidopsis Sequence Match ( AT5G13480.1 )
(BLAST)

001: MYAGGDMHRG SQMPQPPMMR QSSASSTNIN PDYHHPSGPF DPNVDSFGAK RMRKHTQRRA VDYTSTVVRY IQARTWQRDS RDRTTLQPTP AAAVDMLPTV
101: AYSDNPSTSF AAKFVHASLN KNRCSINRVL WTPSGRRLIT GSQSGEFTLW NGQSFNFEMI LQAHDQPIRS MVWSHNENYM VSGDDGGTLK YWQNNMNNVK
201: ANKTAHKESI RDLSFCKTDL KFCSCSDDTT VKVWDFTKCV DESSLTGHGW DVKSVDWHPT KSLLVSGGKD QLVKLWDTRS GRELCSLHGH KNIVLSVKWN
301: QNGNWLLTAS KDQIIKLYDI RTMKELQSFR GHTKDVTSLA WHPCHEEYFV SGSSDGSICH WIVGHENPQI EIPNAHDNSV WDLAWHPIGY LLCSGSNDHT
401: TKFWCRNRPA DNPRDVLMQN QGYNEQGFGR QPDNFQPSEA SPIPGAFVPG LTRNEGTIPG IGIAMPFDAS SQGDHKQPLP GSMALGAPPL PPGPHPSLLG
501: SGQQQGYQQQ QQHQGHPQQM LPMPNMPHHQ LPPSSHMPLH PHHLPRPMQM PPHGHMPPPS MPMSHQMPGS MGMQGGMNPQ MSQSHFMGAP SGVFQGQPNS
601: GGPQMYPQGR GGFNRPQMIP GYNNPFQQQQ QPPLPPGPPP NNNQQHQ

Arabidopsis Description

FYTransducin/WD40 repeat-like superfamily protein [Source:TAIR;Acc:AT5G13480]
SUBAcon: [peroxisome,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.