Factsheet for TraesCS6A01G250200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

mitochondrion 2
cytosol 3

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol
iPSORT:	mitochondrion
MultiLoc:	cytosol
PProwler:	mitochondrion
WoLF PSORT:	cytosol
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS6D01G232000.1	Wheat	cytosol	100.0	100.0
TraesCS6B01G275200.2	Wheat	cytosol	99.33	99.33
HORVU6Hr1G063000.1	Barley	cytosol	98.67	93.08
Os02t0543400-01	Rice	cytosol, mitochondrion	88.0	87.71
EES05216	Sorghum	cytosol	87.67	86.8
Zm00001d050708_P002	Maize	cytosol	86.67	85.81
HORVU0Hr1G027010.1	Barley	plastid	98.67	82.45
GSMUA_Achr6P13100_001	Banana	cytosol	75.33	74.34
VIT_09s0002g01580.t01	Wine grape	cytosol	72.67	72.91
Solyc11g005550.1.1	Tomato	cytosol	71.0	71.24
Bra024323.1-P	Field mustard	cytosol	70.33	71.04
CDY08856	Canola	cytosol	70.33	71.04
PGSC0003DMT400010145	Potato	cytosol	70.67	70.9
KRH59511	Soybean	cytosol, nucleus	70.67	70.67
CDX84544	Canola	cytosol	70.67	70.67
AT5G64730.1	Thale cress	cytosol	70.0	70.23
KRH43376	Soybean	nucleus	71.0	66.36
TraesCS4A01G258000.1	Wheat	cytosol	28.33	26.32
TraesCS2A01G196900.1	Wheat	plastid	27.67	25.08
TraesCS7A01G499900.1	Wheat	nucleus	24.0	20.81
TraesCS1A01G358200.1	Wheat	cytoskeleton, cytosol, nucleus	14.0	19.09
TraesCS1A01G443600.1	Wheat	cytosol	24.67	15.58
TraesCS2A01G126700.2	Wheat	cytoskeleton, cytosol, nucleus	19.33	14.61
TraesCS3A01G175600.2	Wheat	plastid	23.0	14.44
TraesCS5A01G293600.2	Wheat	nucleus	20.33	8.58
TraesCS3A01G317500.1	Wheat	cytosol	19.33	6.98
TraesCS1A01G164300.1	Wheat	cytosol	17.67	6.51
TraesCS2A01G592600.1	Wheat	cytosol	18.33	5.95

Protein Annotations

EnsemblPlants:TraesCS6A01G250200.1	EnsemblPlantsGene:TraesCS6A01G250200	Gene3D:2.130.10.10	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS
InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	PANTHER:PTHR22847	PFAM:PF00400	PFscan:PS50082	PFscan:PS50294
ScanProsite:PS00678	SMART:SM00320	SUPFAM:SSF50978	TIGR:cd00200	MapMan:35.1	:

Description

No Description!

Coordinates

chr6A:-:464513381..464517006

Molecular Weight (calculated)

33164.0 Da

IEP (calculated)

7.258

GRAVY (calculated)

-0.306

Length

300 amino acids

Sequence
(BLAST)

001: MSSAAQQLPR TESRTLSGHE GAVLAVRFNH DGKYCLSCGK DRTVRLWNPH TGAHVKTYKS HGREVRDVNA SSDNAKLVSC GGDKQIFYWD VASGKVIRKF
101: RGHNSEVNSV KFNEHNTVVL SAGYDRSVRA FDCRSQSSDP IQTIDTFQDS VMSVNVTNTE IIAGSVDGTV RTFDIRMGRE TVDNLGHPVN CISLSNDRNC
201: LLANCLDSTV RLLDKNSGEM LQEYKGHICK SFKMDCCLTN DDAFVIGGSE DGFVFFWELV DAPIVATFRA HSSVVTSVTY HPTKTCMLTS SVDGTIRVWT

Best Arabidopsis Sequence Match ( AT5G64730.1 )
(BLAST)

001: MSATELPTKE AHILKGHEGA VLAARFNGDG NYALTCGKDR TIRLWNPHRG ILIKTYKSHG REVRDVHVTS DNAKFCSCGG DRQVYYWDVS TGRVIRKFRG
101: HDGEVNAVKF NDSSSVVVSA GFDRSLRVWD CRSHSVEPVQ IIDTFLDTVM SVVLTKTEII GGSVDGTVRT FDMRIGREMS DNLGQPVNCI SISNDGNCVL
201: AGCLDSTLRL LDRTTGELLQ VYKGHISKSF KTDCCLTNSD AHVIGGSEDG LVFFWDLVDA KVLSKFRAHD LVVTSVSYHP KEDCMLTSSV DGTIRVWKK

Arabidopsis Description

Transducin/WD40 repeat-like superfamily protein [Source:UniProtKB/TrEMBL;Acc:Q94AH2]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.