Factsheet for TraesCS2A01G196900.1

Subcellular Localization

min:

: max

Winner_takes_all: plastid

Predictor Summary:

plastid 7
cytosol 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	plastid
Any Predictor:	cytosol, plastid
ChloroP:	plastid
iPSORT:	plastid
MultiLoc:	cytosol
Predotar:	plastid
PProwler:	plastid
TargetP:	plastid
WoLF PSORT:	plastid
YLoc:	plastid

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
TraesCS2B01G224500.1	Wheat	plastid	98.19	97.89
TraesCS2D01G204900.1	Wheat	cytosol, plastid	98.49	90.3
HORVU2Hr1G041020.2	Barley	cytosol, plastid	97.89	90.0
KXG36525	Sorghum	plastid	86.1	86.63
Zm00001d021868_P001	Maize	plastid	85.2	85.98
Os07t0572000-01	Rice	plastid	87.61	85.8
Zm00001d021866_P001	Maize	plastid	84.89	85.67
GSMUA_Achr7P01850_001	Banana	plastid	47.73	67.52
Solyc09g065290.2.1	Tomato	cytosol, plastid	63.44	66.67
VIT_07s0151g00960.t01	Wine grape	cytosol	62.54	65.71
PGSC0003DMT400049837	Potato	cytosol, plastid	62.54	65.71
CDX91316	Canola	cytosol	60.42	61.35
Bra018529.1-P	Field mustard	cytosol	60.12	61.04
CDX97287	Canola	cytosol	60.12	61.04
AT4G02730.1	Thale cress	cytosol	61.03	60.66
KRH71413	Soybean	nucleus	58.31	60.31
KRH32024	Soybean	cytosol	58.01	60.19
TraesCS4A01G258000.1	Wheat	cytosol	56.19	57.59
CDX70436	Canola	plastid	24.77	49.1
TraesCS6A01G250200.1	Wheat	cytosol	25.08	27.67
TraesCS1A01G358200.1	Wheat	cytoskeleton, cytosol, nucleus	17.22	25.91
TraesCS7A01G499900.1	Wheat	nucleus	25.38	24.28
TraesCS1A01G443600.1	Wheat	cytosol	29.91	20.84
TraesCS2A01G126700.2	Wheat	cytoskeleton, cytosol, nucleus	22.96	19.14
TraesCS3A01G175600.2	Wheat	plastid	22.05	15.27
TraesCS5A01G293600.2	Wheat	nucleus	25.08	11.67
TraesCS1A01G164300.1	Wheat	cytosol	22.96	9.34
TraesCS3A01G317500.1	Wheat	cytosol	21.75	8.66
TraesCS2A01G592600.1	Wheat	cytosol	22.36	8.0

Protein Annotations

MapMan:12.3.3.2.3	Gene3D:2.130.10.10	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515
InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400	PRINTS:PR00320	ScanProsite:PS00678
PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22847	PANTHER:PTHR22847:SF602	SMART:SM00320	SUPFAM:SSF50978
EnsemblPlantsGene:TraesCS2A01G196900	EnsemblPlants:TraesCS2A01G196900.1	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom
InterPro:WD40_repeat_dom_sf	TIGR:cd00200	SEG:seg	:	:	:

Description

No Description!

Coordinates

chr2A:-:166754484..166757871

Molecular Weight (calculated)

35814.4 Da

IEP (calculated)

8.485

GRAVY (calculated)

-0.174

Length

331 amino acids

Sequence
(BLAST)

001: MSSATQQQPP PAAPPYRPYR QVRAATPHAR AISCVRFSPC GRLLATASLD GTVALLSPSS LAVIANLRGH TQGVSDLSWS TDSNYLCSAS DDRTLRIWDI
101: RSILPGPKPA DPNADRCIRV LKGHTNFVFS ANFNPQTSSQ VASGGFDCTV RIWDVSSGRC IRAIDAHSEP VTSVHFIRDG SIIVSGSHDG SCKIWDAGTG
201: SCLKTVIDDK KPAVSCSMFS PNGKFILVAT LDDSLKLCNY ATGKFLKVYS GHVNRVYCIQ SAFSVRNGKY IVSGSEDKCV YIWDLQGKNI LQKMEGHTDA
301: VISVSCHPTE NKIASGSLDN DKTVRLWVQD G

Best Arabidopsis Sequence Match ( AT4G02730.1 )
(BLAST)

001: MPSGGNGTSN GVANANSTGN AGTSGNVPIY KPYRHLKTLE GHTAAISCVK FSNDGNLLAS ASVDKTMILW SATNYSLIHR YEGHSSGISD LAWSSDSHYT
101: CSASDDCTLR IWDARSPYEC LKVLRGHTNF VFCVNFNPPS NLIVSGSFDE TIRIWEVKTG KCVRMIKAHS MPISSVHFNR DGSLIVSASH DGSCKIWDAK
201: EGTCLKTLID DKSPAVSFAK FSPNGKFILV ATLDSTLKLS NYATGKFLKV YTGHTNKVFC ITSAFSVTNG KYIVSGSEDN CVYLWDLQAR NILQRLEGHT
301: DAVISVSCHP VQNEISSSGN HLDKTIRIWK QDA

Arabidopsis Description

WDR5BCOMPASS-like H3K4 histone methylase component WDR5B [Source:UniProtKB/Swiss-Prot;Acc:Q9SY00]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.