Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- plastid 3
- cytosol 2
- nucleus 2
- mitochondrion 2
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| Solyc09g065290.2.1 | Tomato | cytosol, plastid | 76.83 | 76.83 |
| KRH71413 | Soybean | nucleus | 76.51 | 75.31 |
| PGSC0003DMT400049837 | Potato | cytosol, plastid | 75.24 | 75.24 |
| KRH32024 | Soybean | cytosol | 75.24 | 74.29 |
| GSMUA_Achr7P01850_001 | Banana | plastid | 53.33 | 71.79 |
| CDX91316 | Canola | cytosol | 70.48 | 68.1 |
| AT4G02730.1 | Thale cress | cytosol | 71.75 | 67.87 |
| Bra018529.1-P | Field mustard | cytosol | 70.16 | 67.79 |
| CDX97287 | Canola | cytosol | 70.16 | 67.79 |
| VIT_07s0205g00150.t01 | Wine grape | cytosol | 64.13 | 64.54 |
| TraesCS2A01G196900.1 | Wheat | plastid | 65.71 | 62.54 |
| TraesCS2B01G224500.1 | Wheat | plastid | 65.71 | 62.35 |
| KXG36525 | Sorghum | plastid | 64.76 | 62.01 |
| CDX70436 | Canola | plastid | 32.7 | 61.68 |
| Zm00001d021866_P001 | Maize | plastid | 63.81 | 61.28 |
| Zm00001d021868_P001 | Maize | plastid | 63.49 | 60.98 |
| Os07t0572000-01 | Rice | plastid | 63.81 | 59.47 |
| TraesCS2D01G204900.1 | Wheat | cytosol, plastid | 65.71 | 57.34 |
| HORVU2Hr1G041020.2 | Barley | cytosol, plastid | 65.08 | 56.94 |
| VIT_09s0002g01580.t01 | Wine grape | cytosol | 26.67 | 28.09 |
| VIT_05s0094g00800.t01 | Wine grape | cytosol | 29.52 | 27.03 |
| VIT_13s0064g00330.t01 | Wine grape | extracellular | 9.21 | 22.14 |
| VIT_11s0016g02220.t01 | Wine grape | cytosol | 26.03 | 20.87 |
| VIT_13s0064g00360.t01 | Wine grape | nucleus | 31.43 | 20.75 |
| VIT_18s0164g00020.t01 | Wine grape | nucleus | 25.4 | 20.46 |
| VIT_17s0000g09750.t01 | Wine grape | cytosol | 25.4 | 15.44 |
| VIT_05s0077g02310.t01 | Wine grape | cytosol | 21.59 | 14.05 |
| VIT_00s0776g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus | 20.95 | 12.67 |
| VIT_13s0019g00220.t01 | Wine grape | nucleus | 23.49 | 9.57 |
| VIT_10s0071g01150.t01 | Wine grape | cytosol | 23.17 | 9.16 |
| VIT_00s1397g00010.t01 | Wine grape | cytosol | 6.03 | 5.6 |
| VIT_00s1406g00010.t01 | Wine grape | cytosol, mitochondrion, nucleus | 3.17 | 3.39 |
Protein Annotations
| EntrezGene:100249339 | wikigene:100249339 | MapMan:12.3.3.2.3 | Gene3D:2.130.10.10 | EMBL:AM462218 | ProteinID:CAN61446 |
| ProteinID:CAN61446.1 | ProteinID:CCB51890 | ProteinID:CCB51890.1 | UniProt:F6HI44 | EMBL:FN595764 | InterPro:G-protein_beta_WD-40_rep |
| GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 |
| EntrezGene:LOC100249339 | wikigene:LOC100249339 | PFAM:PF00400 | PIRSF:PIRSF002394 | PRINTS:PR00320 | ScanProsite:PS00678 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR22847 | PANTHER:PTHR22847:SF602 | SMART:SM00320 | SUPFAM:SSF50978 |
| TIGR:TC57010 | UniParc:UPI00015CA44D | ArrayExpress:VIT_07s0151g00960 | EnsemblPlantsGene:VIT_07s0151g00960 | EnsemblPlants:VIT_07s0151g00960.t01 | unigene:Vvi.15884 |
| InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf | RefSeq:XP_002278415 |
| RefSeq:XP_002278415.1 | RefSeq:XP_010651970.1 | RefSeq:XP_010651971.1 | : | : | : |
Description
No Description!
Coordinates
chr7:-:1163150..1165819
Molecular Weight (calculated)
34222.5 Da
IEP (calculated)
7.785
GRAVY (calculated)
-0.086
Length
315 amino acids
Sequence
(BLAST)
(BLAST)
001: MASGGGGSNS LQYRPYRLLR TLAAHDRAVS CVKFSSDGTL LASASLDKTL IVWSSQTLTL KSRLVGHSGG ISDLAWSSDS HYICSASDDL TLRIWDAQSA
101: ECVKTLRGHT DLVFCVNFNP QSNLIVSGSF DETVRIWDVK TGRPLHTIAA HSMPVTSVYF NRDGSLIVSG SHDGSCKIWA SDTGALLKTL IEDNGPAISF
201: AKFSPNGKYI LVATLDDTLK LWNYSTGKSL KIYTGHVNKV YCIASAFSVT YGKYIVSGSE DKCVYVWDLQ GKNPLQKLEG HTDTVISVSC HPNENKIASA
301: GLDGDKTVRI WVQDI
101: ECVKTLRGHT DLVFCVNFNP QSNLIVSGSF DETVRIWDVK TGRPLHTIAA HSMPVTSVYF NRDGSLIVSG SHDGSCKIWA SDTGALLKTL IEDNGPAISF
201: AKFSPNGKYI LVATLDDTLK LWNYSTGKSL KIYTGHVNKV YCIASAFSVT YGKYIVSGSE DKCVYVWDLQ GKNPLQKLEG HTDTVISVSC HPNENKIASA
301: GLDGDKTVRI WVQDI
001: MPSGGNGTSN GVANANSTGN AGTSGNVPIY KPYRHLKTLE GHTAAISCVK FSNDGNLLAS ASVDKTMILW SATNYSLIHR YEGHSSGISD LAWSSDSHYT
101: CSASDDCTLR IWDARSPYEC LKVLRGHTNF VFCVNFNPPS NLIVSGSFDE TIRIWEVKTG KCVRMIKAHS MPISSVHFNR DGSLIVSASH DGSCKIWDAK
201: EGTCLKTLID DKSPAVSFAK FSPNGKFILV ATLDSTLKLS NYATGKFLKV YTGHTNKVFC ITSAFSVTNG KYIVSGSEDN CVYLWDLQAR NILQRLEGHT
301: DAVISVSCHP VQNEISSSGN HLDKTIRIWK QDA
101: CSASDDCTLR IWDARSPYEC LKVLRGHTNF VFCVNFNPPS NLIVSGSFDE TIRIWEVKTG KCVRMIKAHS MPISSVHFNR DGSLIVSASH DGSCKIWDAK
201: EGTCLKTLID DKSPAVSFAK FSPNGKFILV ATLDSTLKLS NYATGKFLKV YTGHTNKVFC ITSAFSVTNG KYIVSGSEDN CVYLWDLQAR NILQRLEGHT
301: DAVISVSCHP VQNEISSSGN HLDKTIRIWK QDA
Arabidopsis Description
WDR5BCOMPASS-like H3K4 histone methylase component WDR5B [Source:UniProtKB/Swiss-Prot;Acc:Q9SY00]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.