Factsheet for VIT_10s0071g01150.t01

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

nucleus 2
cytosol 2
mitochondrion 2
plastid 1

Predictors

GFP

MS/MS

Papers

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRG93160	Soybean	cytosol	71.64	75.23
KRH56498	Soybean	cytosol	71.02	74.57
GSMUA_Achr3P27210_001	Banana	golgi	42.91	72.3
Solyc02g021360.2.1	Tomato	cytosol	70.89	70.8
GSMUA_Achr4P05370_001	Banana	golgi, mitochondrion	66.62	66.96
PGSC0003DMT400065114	Potato	cytosol	66.37	65.23
AT5G23430.1	Thale cress	cytosol, mitochondrion, nucleus, plastid	65.12	62.01
CDX88026	Canola	cytosol	62.86	60.43
AT5G08390.1	Thale cress	cytosol	63.49	60.31
CDY60225	Canola	cytosol	62.23	59.4
CDX81101	Canola	cytosol	62.11	58.86
Bra005990.1-P	Field mustard	cytosol	62.61	58.84
CDX80363	Canola	cytosol	62.36	58.47
Bra009683.1-P	Field mustard	cytosol	61.86	54.41
VIT_00s0776g00020.t01	Wine grape	cytosol, mitochondrion, nucleus	35.51	54.32
Zm00001d026621_P006	Maize	cytosol	61.1	53.52
KXG27434	Sorghum	cytosol	60.98	52.83
Zm00001d001828_P033	Maize	cytosol	60.23	52.06
TraesCS2D01G561900.1	Wheat	cytosol	60.35	52.0
Os04t0677700-00	Rice	cytosol	57.97	51.91
TraesCS2A01G592600.1	Wheat	cytosol	60.23	51.89
TraesCS2B01G591600.2	Wheat	cytosol	59.35	51.58
GSMUA_Achr9P23740_001	Banana	golgi	66.62	50.67
VIT_00s1406g00010.t01	Wine grape	cytosol, mitochondrion, nucleus	16.06	43.39
VIT_00s1397g00010.t01	Wine grape	cytosol	16.31	38.35
VIT_07s0151g00960.t01	Wine grape	cytosol	9.16	23.17
VIT_07s0205g00150.t01	Wine grape	cytosol	9.03	23.0
VIT_05s0094g00800.t01	Wine grape	cytosol	8.66	20.06
VIT_11s0016g02220.t01	Wine grape	cytosol	9.28	18.83
VIT_18s0164g00020.t01	Wine grape	nucleus	9.16	18.67
VIT_09s0002g01580.t01	Wine grape	cytosol	6.9	18.39
VIT_13s0064g00330.t01	Wine grape	extracellular	2.76	16.79
VIT_05s0077g02310.t01	Wine grape	cytosol	9.66	15.91
VIT_13s0064g00360.t01	Wine grape	nucleus	9.16	15.3
VIT_17s0000g09750.t01	Wine grape	cytosol	9.28	14.29
VIT_13s0019g00220.t01	Wine grape	nucleus	11.29	11.64

Protein Annotations

EntrezGene:100262947	wikigene:100262947	MapMan:13.4.4.2.2	Gene3D:2.130.10.10	ProteinID:CCB58840	ProteinID:CCB58840.1
UniProt:F6HVX7	EMBL:FN596260	InterPro:G-protein_beta_WD-40_rep	GO:GO:0000166	GO:GO:0003674	GO:GO:0003774
GO:GO:0003777	GO:GO:0003824	GO:GO:0004553	GO:GO:0005488	GO:GO:0005515	GO:GO:0005524
GO:GO:0005575	GO:GO:0005622	GO:GO:0005623	GO:GO:0005737	GO:GO:0005856	GO:GO:0005874
GO:GO:0005975	GO:GO:0007018	GO:GO:0008017	GO:GO:0008150	GO:GO:0008152	GO:GO:0008352
GO:GO:0009987	GO:GO:0016043	GO:GO:0016787	GO:GO:0051013	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	InterPro:Katanin_C-terminal	InterPro:Katanin_bsu1	EntrezGene:LOC100262947	wikigene:LOC100262947	HAMAP:MF_03022
PFAM:PF00400	PFAM:PF13925	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294
PANTHER:PTHR19845	PANTHER:PTHR19845:SF5	SMART:SM00320	SUPFAM:SSF50978	TIGR:TC52778	TIGR:TC66432
UniParc:UPI0001985918	ArrayExpress:VIT_10s0071g01150	EnsemblPlantsGene:VIT_10s0071g01150	EnsemblPlants:VIT_10s0071g01150.t01	unigene:Vvi.1649	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	RefSeq:XP_002268907	RefSeq:XP_002268907.2
RefSeq:XP_010655954.1	RefSeq:XP_010655955.1	RefSeq:XP_010655956.1	RefSeq:XP_010655957.1	SEG:seg	:

Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F6HVX7]

Coordinates

chr10:-:17992462..18022481

Molecular Weight (calculated)

87151.5 Da

IEP (calculated)

7.931

GRAVY (calculated)

-0.305

Length

797 amino acids

Sequence
(BLAST)

001: MTTKRAYKLQ EFVAHSSSVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLSGHTS GIDSVSFDSS ELLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNAIR FTPDGRWVVS GGEDNTVKLW DLTAGKLLHD FKSHEGQLQC IDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSAGPETAGV RCMTFNPDGK TLLCGLHESL KVFSWEPIRC HDAVDVGWSR LSDLNIHEGK LLGCSYNQSC VGVWVVDLSR
301: IEPYAVGNVT RLNGHSESKS SSSGNLSVLT ENTTKASLGR LSISQNTELI MKETKSLGRL SVSQNSDPVD KETKCLASTG SVPGTPQRVN LNTGPKTTLA
401: SSTTAPKRIS AKAHSTANVS AFNKSDVIPV IVPRTNVRLD QAAESRKEVG VSGRTIPFSL QSRTSDFRKS PNRRDELERP TVSVPSENAG SKATDLSTVA
501: DRNIFPAVKC STPGISAAER NVKDDRCIGS GRQEMNSTME PPPNYHHENY ETRVHRANRD ACSIEVQKGG RTRSLVANWE KREISPTYEG QTSSNFSGTV
601: SASNMLPFSA RGYTPSTEKE AVPASDEDAI TDIMEQHGQF VGSIQSRLSK LQVVHRFWER NDIKGAIGAM EKMADHSVFA DVISILREKP DVVTLEICTS
701: LLPLLTSLLE SEMDRHLGIS LEMLLKLVRI FGSVIHSTLS ASSSVGVDIQ AEQRLERCNL CFIELEKIKH CLPALTRRGG SVAKLAQELN LALLEVL

Best Arabidopsis Sequence Match ( AT5G23430.1 )
(BLAST)

001: MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARRGGL VAKSVLELNL AFQEVSS

Arabidopsis Description

Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8H0T9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.