CropPAL

Subcellular Localization

min:

: max

Winner_takes_all: nucleus

Predictor Summary:

extracellular 1
endoplasmic reticulum 1
vacuole 1
plasma membrane 1
golgi 1
plastid 1
cytosol 1
mitochondrion 2
nucleus 2

Predictors

GFP

MS/MS

Papers

Winner Takes All:	nucleus
Any Predictor:	cytosol, mitochondrion, nucleus, plastid
BaCelLo:	secretory
iPSORT:	plastid
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	nucleus

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
KRH13395	Soybean	nucleus	94.55	94.82
VIT_13s0019g00220.t01	Wine grape	nucleus	78.07	72.32
Bra023416.1-P	Field mustard	nucleus	63.27	70.02
Bra006202.1-P	Field mustard	nucleus	63.97	69.18
Solyc08g067040.2.1	Tomato	nucleus	72.63	68.06
AT5G13480.2	Thale cress	nucleus	62.43	68.04
GSMUA_Achr4P29380_001	Banana	nucleus	66.48	66.95
EES04226	Sorghum	nucleus	64.66	64.85
Zm00001d042091_P002	Maize	cytosol, mitochondrion, nucleus, peroxisome, plastid	64.8	64.62
TraesCS5A01G293600.2	Wheat	nucleus	63.41	63.85
TraesCS5D01G300900.1	Wheat	nucleus	63.41	63.67
TraesCS5B01G292800.1	Wheat	nucleus	63.41	63.67
HORVU5Hr1G077690.1	Barley	cytosol, mitochondrion, plastid, vacuole	63.83	60.69
CDY01533	Canola	plastid	12.01	54.43
Os01t0951000-02	Rice	cytosol, mitochondrion, nucleus	19.13	48.41
KRH21524	Soybean	cytosol	7.68	24.44
KRH71413	Soybean	nucleus	10.61	23.75
KRH32024	Soybean	cytosol	10.47	23.51
KRH35009	Soybean	cytosol	4.47	23.19
KRH50874	Soybean	nucleus	10.61	23.1
KRH02239	Soybean	nucleus	10.47	22.66
KRG94875	Soybean	nucleus	9.92	20.58
KRH06660	Soybean	nucleus	9.92	20.58
KRH59511	Soybean	cytosol, nucleus	8.52	20.33
KRH43376	Soybean	nucleus	8.52	19.0
KRG91764	Soybean	cytoskeleton, cytosol, nucleus	9.78	17.9
KRH55267	Soybean	cytosol	3.35	16.9
KRH12069	Soybean	nucleus	11.03	16.6
KRH37088	Soybean	nucleus	10.89	16.35
KRH70275	Soybean	nucleus	10.61	15.83
KRH08668	Soybean	nucleus	10.47	15.62
KRH57171	Soybean	cytosol	9.78	13.62
KRH03886	Soybean	nucleus	9.64	13.42
KRH37298	Soybean	cytosol	6.98	13.19
KRG93160	Soybean	cytosol	12.85	12.12
KRH56498	Soybean	cytosol	12.85	12.12
KRH20528	Soybean	cytosol	12.99	11.95
KRH10790	Soybean	cytosol	12.85	11.15
KRH49977	Soybean	cytosol	10.2	10.66
KRH35010	Soybean	nucleus	1.68	7.45
KRH21526	Soybean	cytosol, peroxisome	5.45	6.51

Protein Annotations

EntrezGene:100788493	MapMan:16.2.1.2.7	Gene3D:2.130.10.10	UniProt:A0A0R0GQZ5	EMBL:ACUP02008301	InterPro:G-protein_beta_WD-40_rep
EnsemblPlantsGene:GLYMA_13G198200	GO:GO:0003674	GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943
InterPro:IPR017986	EnsemblPlants:KRH20750	ProteinID:KRH20750	ProteinID:KRH20750.1	PFAM:PF00400	PRINTS:PR00320
ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR22836	SMART:SM00320	SUPFAM:SSF50978
UniParc:UPI0006EDCC1D	InterPro:WD40/YVTN_repeat-like_dom_sf	InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf
SEG:seg	:	:	:	:	:

Description

hypothetical protein

Coordinates

chr13:-:31193585..31206900

Molecular Weight (calculated)

79345.1 Da

IEP (calculated)

8.439

GRAVY (calculated)

-0.694

Length

716 amino acids

Sequence
(BLAST)

001: MMYNDPQQQQ QQHQYQQQQQ QQHFHHQPPG PEFHRGPLPP SLPPPVMRQG SASSTNLAPE FHHPGPGGPP PPHYDAHSDI HGAKRIRKLT QRKAVDYTST
101: VVRYMQIRMS QRDSRDRTVL QPTSAAAIDM LPAVGYPDNP STSFAAKFVH TSLNKNRCPI NRVLWTPTGR RLITGSQTGE FTLWNGQSFN FEMILQAHDQ
201: AIRSMVWSHN DNWMVSGDDG GAIKYWQNNM NNVKANKSAH KESVRDLSFC RTDLKFCSCS DDTTVKVWDF ARCQEECSLT GHGWDVKSVD WHPTKSLLVS
301: GGKDNLVKLW DAKTGRELCS FHGHKNTVLC VKWNQNGNWV LTASKDQIIK LYDIRAMKEL ESFRGHRKDV TTLAWHPFHE EYFVSGSYDG SIFHWLVGHE
401: TPQIEISNAH DNNVWDLAWH PIGYLLCSGS SDHTTKFWCR NRPGDPARDR FNTGMQGYAE QSPVAGRTGG NFPIAEGPTT PGPFAPGLTR NEGTIPGVGV
501: AMPLSIPSLD MPQGEQKQPH PVSMGAPPLP PGPHPSLINA NQQQPYQQNP QQMPQHQHQA LPQQMGSLPM PPNMQQLQHP SHSPFPNMPR PPPQMPIGMP
601: GSIPGISSVP TSHPMPMPGP MGMQGAMNQM GSPMPQGPYV GMNQMHSGSL PTSGGPPLGG FPGNLPNMQG PSNANYPQGA SFNRPQGGQM PLMQGLVINL
701: GCLQTHNHRI GNCFLP

Best Arabidopsis Sequence Match ( AT5G13480.3 )
(BLAST)

001: MPQPPMMRQS SASSTNINPD YHHPSGPFDP NVDSFGAKRM RKHTQRRAVD YTSTVVRYIQ ARTWQRDSRD RTTLQPTPAA AVDMLPTVAY SDNPSTSFAA
101: KFVHASLNKN RCSINRVLWT PSGRRLITGS QSGEFTLWNG QSFNFEMILQ AHDQPIRSMV WSHNENYMVS GDDGGTLKYW QNNMNNVKAN KTAHKESIRD
201: LSFCKTDLKF CSCSDDTTVK VWDFTKCVDE SSLTGHGWDV KSVDWHPTKS LLVSGGKDQL VKLWDTRSGR ELCSLHGHKN IVLSVKWNQN GNWLLTASKD
301: QIIKLYDIRT MKELQSFRGH TKDVTSLAWH PCHEEYFVSG SSDGSICHWI VGHENPQIEI PNAHDNSVWD LAWHPIGYLL CSGSNDHTTK FWCRNRPADN
401: PRDVLMQNQG YNEQGFGRQP DNFQPSEASP IPGAFVPGLT RNEGTIPGIG IAMPFDASSQ GDHKQPLPGS MALGAPPLPP GPHPSLLGSG QQQGYQQQQQ
501: HQGHPQQMLP MPNMPHHQLP PSSHMPLHPH HLPRPMQMPP HGHMPPPSMP MSHQMPGSMG MQGGMNPQMS QSHFMGAPSG VFQGQPNSGG PQMYPQGRGG
601: FNRPQMIPGY NNPFQQVPFK H

Arabidopsis Description

FYTransducin/WD40 repeat-like superfamily protein [Source:TAIR;Acc:AT5G13480]
SUBAcon: [plastid,nucleus]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.