Factsheet for TraesCS5D01G394200.1

Subcellular Localization

min:

: max

Winner_takes_all: cytosol

Predictor Summary:

cytosol 2
mitochondrion 2
nucleus 1

Predictors

GFP

MS/MS

Papers

Winner Takes All:	cytosol
Any Predictor:	cytosol, mitochondrion, nucleus
MultiLoc:	cytosol
PProwler:	mitochondrion
TargetP:	mitochondrion
WoLF PSORT:	nucleus
YLoc:	cytosol

PPI

No PPI Data

Homology

Paralog

locus	Identity	Homology Identity

Ortholog

locus	Homology Species	Location	Identity	Homology Identity
HORVU5Hr1G094540.7	Barley	cytosol, mitochondrion, nucleus	95.54	95.73
Zm00001d033994_P002	Maize	mitochondrion, nucleus	76.36	77.71
Os03t0746600-01	Rice	nucleus	76.36	77.1
KXG37566	Sorghum	plastid	76.55	68.7
GSMUA_AchrUn_...	Banana	cytosol, nucleus, plastid	10.08	55.32
GSMUA_Achr8P28660_001	Banana	cytosol	35.85	54.9
GSMUA_Achr2P06000_001	Banana	cytosol	49.22	53.59
PGSC0003DMT400039207	Potato	cytosol	52.13	52.85
CDY05801	Canola	cytosol	50.39	51.79
KRH57171	Soybean	cytosol	51.55	51.75
KRH03886	Soybean	nucleus	50.97	51.17
Solyc03g111740.2.1	Tomato	cytosol	47.67	51.04
AT5G50230.1	Thale cress	cytosol	50.19	50.88
VIT_17s0000g09750.t01	Wine grape	cytosol	50.58	50.39
Bra037932.1-P	Field mustard	mitochondrion	50.19	45.04
CDY05802	Canola	mitochondrion	49.81	44.7
TraesCS4D01G056800.1	Wheat	cytosol	13.57	21.88
TraesCS6D01G232000.1	Wheat	cytosol	12.4	21.33
TraesCS7D01G486800.1	Wheat	cytosol, plastid	13.37	19.94
TraesCS2D01G204900.1	Wheat	cytosol, plastid	13.76	19.67
TraesCS1D01G451700.1	Wheat	cytosol	15.5	16.84
TraesCS1D01G363000.1	Wheat	cytosol	12.79	16.75
TraesCS2D01G129200.1	Wheat	cytoskeleton, cytosol, nucleus	12.6	16.41
TraesCS3D01G181100.1	Wheat	cytosol	14.34	15.45
TraesCS5D01G300900.1	Wheat	nucleus	11.63	8.42
TraesCS1D01G161300.1	Wheat	cytosol	12.79	8.25
TraesCS3D01G313800.1	Wheat	cytosol	12.4	7.73
TraesCS2D01G561900.1	Wheat	cytosol	13.18	7.35
TraesCS1D01G151100.1	Wheat	cytosol	2.91	2.36

Protein Annotations

Gene3D:2.130.10.10	MapMan:35.1	InterPro:Autophagy-rel_prot_16	ncoils:Coil	InterPro:G-protein_beta_WD-40_rep	GO:GO:0003674
GO:GO:0005488	GO:GO:0005515	InterPro:IPR001680	InterPro:IPR015943	InterPro:IPR017986	PFAM:PF00400
PFAM:PF08614	PRINTS:PR00320	ScanProsite:PS00678	PFscan:PS50082	PFscan:PS50294	PANTHER:PTHR19878
PANTHER:PTHR19878:SF8	SMART:SM00320	SUPFAM:SSF50978	EnsemblPlantsGene:TraesCS5D01G394200	EnsemblPlants:TraesCS5D01G394200.1	InterPro:WD40/YVTN_repeat-like_dom_sf
InterPro:WD40_repeat	InterPro:WD40_repeat_CS	InterPro:WD40_repeat_dom	InterPro:WD40_repeat_dom_sf	TIGR:cd00200	SEG:seg

Description

No Description!

Coordinates

chr5D:+:462087242..462089808

Molecular Weight (calculated)

56308.9 Da

IEP (calculated)

7.044

GRAVY (calculated)

-0.301

Length

516 amino acids

Sequence
(BLAST)

001: MTQAEADAGK AAIQRALRAL RQRHLVEEGA HRPAIEALNR PFAAHALEWK EKAEKNELEL QQCYKAQSRL SEQLVSEINE AKTSKALLKE KEALITALQS
101: ELQQTSEENV QLKQSLEEKT NALDLLVQEH QAAKAELERV LTKLKAVEHE NTQLVERLMQ AKMVEAEKLN EANAMYEEMV LKLKAAGLGA GGIQHHAQQE
201: ADGVIRRSEA GYVDIMETPI PSTCRITIRA HDGGCGSIIF QNNTDKLISG GQDQTVKIWS AHTGALTSTL QGCLGTVNDL AVTNDNKFVI AACSSNKLFV
301: WEVNGGRPRH TLTGHTKNVC SVDASWVKSL VIASSSNDRT IKIWDLQTGF CKSTIMSASN PNTLAFIHGD AICSGHRDGS LKFHDIRSGK CFATVAAHID
401: VSSICVTRSK NHVLSSGREG VHKLFDVRMP TEVVEICGTF RAPSNRLVGS WGRACISPDE NCIASGSSDG SVCIWSRSKN EGPTILEGHS LPVVTSAWSE
501: FGPLATADKN HIHIWA

Best Arabidopsis Sequence Match ( AT5G50230.1 )
(BLAST)

001: MVQEEKAMEA INDALRALRK RHLLEEGAHA PAISALSKPL ISQGSEWKEK TEKLETELQQ CYKAQSRLSE QLVIEVAESR TSKAILQEKE LLINDLQKEL
101: TQRREDCTRL QEELEEKTKT VDVLIAENLE IRSQLEEMTS RVQKAETENK MLIDRWMLQK MQDAERLNEA NDLYEEMLAK LKANGLETLA RQQVDGIVRR
201: NEDGTDHFVE STIPSTCANR IHAHEGGCGS IVFEYNSGTL FTGGQDRAVK MWDTNSGTLI KSLYGSLGNI LDMAVTHDNK SVIAATSSNN LFVWDVSSGR
301: VRHTLTGHTD KVCAVDVSKF SSRHVVSAAY DRTIKLWDLH KGYCTNTVLF TSNCNAICLS IDGLTVFSGH MDGNLRLWDI QTGKLLSEVA GHSSAVTSVS
401: LSRNGNRILT SGRDNVHNVF DTRTLEICGT LRASGNRLAS NWSRSCISPD DDYVAAGSAD GSVHVWSLSK GNIVSILKEQ TSPILCCSWS GIGKPLASAD
501: KNGYVCTWT

Arabidopsis Description

ATG16Autophagy-related protein 16 [Source:UniProtKB/Swiss-Prot;Acc:Q6NNP0]
SUBAcon: [cytosol]

Hydropathy Plot

About CropPAL

The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.