Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- nucleus 2
- cytosol 2
- mitochondrion 2
- plastid 1
| Predictors | GFP | MS/MS | Papers |
|---|---|---|---|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| PGSC0003DMT400065114 | Potato | cytosol | 96.91 | 96.79 |
| Solyc02g021360.2.1 | Tomato | cytosol | 74.07 | 75.19 |
| GSMUA_Achr3P27210_001 | Banana | golgi | 37.65 | 64.48 |
| GSMUA_Achr4P05370_001 | Banana | golgi, mitochondrion | 56.05 | 57.25 |
| AT5G23430.1 | Thale cress | cytosol, mitochondrion, nucleus, plastid | 55.8 | 54.0 |
| CDX88026 | Canola | cytosol | 55.19 | 53.92 |
| AT5G08390.1 | Thale cress | cytosol | 54.81 | 52.92 |
| CDX80363 | Canola | cytosol | 54.44 | 51.88 |
| CDY60225 | Canola | cytosol | 53.33 | 51.74 |
| Bra005990.1-P | Field mustard | cytosol | 53.95 | 51.53 |
| CDX81101 | Canola | cytosol | 53.21 | 51.25 |
| Bra009683.1-P | Field mustard | cytosol | 54.2 | 48.45 |
| Zm00001d026621_P006 | Maize | cytosol | 53.21 | 47.36 |
| KXG27434 | Sorghum | cytosol | 53.58 | 47.17 |
| TraesCS2D01G561900.1 | Wheat | cytosol | 53.33 | 46.7 |
| TraesCS2A01G592600.1 | Wheat | cytosol | 53.33 | 46.7 |
| Zm00001d001828_P033 | Maize | cytosol | 52.96 | 46.53 |
| Os04t0677700-00 | Rice | cytosol | 50.62 | 46.07 |
| TraesCS2B01G591600.2 | Wheat | cytosol | 51.98 | 45.91 |
| GSMUA_Achr9P23740_001 | Banana | golgi | 56.79 | 43.89 |
| Solyc02g078800.2.1 | Tomato | extracellular | 42.59 | 33.53 |
| Solyc09g010620.1.1 | Tomato | cytosol | 4.81 | 23.93 |
| Solyc09g065290.2.1 | Tomato | cytosol, plastid | 8.64 | 22.22 |
| Solyc02g091790.2.1 | Tomato | cytosol, nucleus | 8.27 | 21.34 |
| Solyc03g059100.1.1 | Tomato | nucleus | 8.02 | 19.94 |
| Solyc07g008860.2.1 | Tomato | cytoskeleton, cytosol, nucleus | 8.02 | 16.37 |
| Solyc03g112530.2.1 | Tomato | nucleus | 9.26 | 15.59 |
| Solyc01g094480.2.1 | Tomato | nucleus | 9.26 | 15.56 |
| Solyc11g005550.1.1 | Tomato | cytosol | 5.68 | 15.38 |
| Solyc03g111740.2.1 | Tomato | cytosol | 8.15 | 13.69 |
| Solyc08g067040.2.1 | Tomato | nucleus | 11.85 | 12.57 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 | GO:GO:0005488 | GO:GO:0005515 |
| GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 | GO:GO:0005856 | GO:GO:0005874 |
| GO:GO:0008017 | GO:GO:0008150 | GO:GO:0008352 | GO:GO:0009987 | GO:GO:0016043 | GO:GO:0051013 |
| InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | UniProt:K4BP28 | InterPro:Katanin_C-terminal | InterPro:Katanin_bsu1 |
| HAMAP:MF_03022 | PFAM:PF00400 | PFAM:PF13925 | PRINTS:PR00320 | ScanProsite:PS00678 | PFscan:PS50082 |
| PFscan:PS50294 | PANTHER:PTHR19845 | PANTHER:PTHR19845:SF5 | SMART:SM00320 | SUPFAM:SSF50978 | EnsemblPlantsGene:Solyc04g008720.2 |
| EnsemblPlants:Solyc04g008720.2.1 | UniParc:UPI000276731A | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom |
| InterPro:WD40_repeat_dom_sf | SEG:seg | : | : | : | : |
Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:K4BP28]
Coordinates
chr4:+:2384699..2393112
Molecular Weight (calculated)
88997.6 Da
IEP (calculated)
7.327
GRAVY (calculated)
-0.342
Length
810 amino acids
Sequence
(BLAST)
(BLAST)
001: MTTTKRAYKL QEFVAHSLSV NCLKIGRKSS RVLVTGGEDH KVNLWSIGKP DAILSLSGHS SGIDSVSFDS SEVLVAAGAA SGTIKLWDLE EAKIVRTLTG
101: HRSNCISLDF HPFGEFFASG SLDTNLKIWD IRRKGCIHTY KGHTRGVNTI RFTPDGRWVV SGGEDRSVKI WDLTAGKLLH DFKCHEGKIQ CIDFHPHEFL
201: LATGSADKTV KFWDLESFEL IGSAGPETTG VRSMAFNTDG RTLLCGLHEN LKVFSWEPIR YHDTVDVGWS TLSDLSIHEG KLLGCSYNQS CVGVWVVDIS
301: CLEPYTMDSS TPSNGHSAAK SNLRVNLSTS AEDNTDASCR GQLISQNSDL VKESKSFRRL SLSQNMVLQR DSAALTTITD TPGTTQKVNL STGPKAPPFS
401: SRAVPNTTGV KRNSAKTHST ENGSIVNKEI IPVLVPRNNE RTELASECRK GGVAGREIPQ RLQPKVSDWK SPTTNEDLGR PTSAAQSEVE VPKAIESSSP
501: ADRNNFPSVK CSIFETAATE RSVNDDTNLV STKLDINTAH EPLSRHPIEN YEARGNILNR KPYSMLGQQR GRTRSTIANW EKRDKVPGYE GLAPCIAGAV
601: PAPDVVPTNV NLTHRNSKII PEKREDPLSA VSDAGTADDE DIIADLMEQH KEFVGSMQSR LAKLQVVYQY WKRHDIKGAV SVMEKMADHA VLSELVSFLA
701: EKNDIITLEI CTCLLPLLTG LLESKLDRHQ DISLSMLLKL VKVFGSLIYT SLSTPTSVGV DIEAEKRMER YNLCFIELEK VKSCLPALSR RGGSIAKTAQ
801: ELNLALHEVS
101: HRSNCISLDF HPFGEFFASG SLDTNLKIWD IRRKGCIHTY KGHTRGVNTI RFTPDGRWVV SGGEDRSVKI WDLTAGKLLH DFKCHEGKIQ CIDFHPHEFL
201: LATGSADKTV KFWDLESFEL IGSAGPETTG VRSMAFNTDG RTLLCGLHEN LKVFSWEPIR YHDTVDVGWS TLSDLSIHEG KLLGCSYNQS CVGVWVVDIS
301: CLEPYTMDSS TPSNGHSAAK SNLRVNLSTS AEDNTDASCR GQLISQNSDL VKESKSFRRL SLSQNMVLQR DSAALTTITD TPGTTQKVNL STGPKAPPFS
401: SRAVPNTTGV KRNSAKTHST ENGSIVNKEI IPVLVPRNNE RTELASECRK GGVAGREIPQ RLQPKVSDWK SPTTNEDLGR PTSAAQSEVE VPKAIESSSP
501: ADRNNFPSVK CSIFETAATE RSVNDDTNLV STKLDINTAH EPLSRHPIEN YEARGNILNR KPYSMLGQQR GRTRSTIANW EKRDKVPGYE GLAPCIAGAV
601: PAPDVVPTNV NLTHRNSKII PEKREDPLSA VSDAGTADDE DIIADLMEQH KEFVGSMQSR LAKLQVVYQY WKRHDIKGAV SVMEKMADHA VLSELVSFLA
701: EKNDIITLEI CTCLLPLLTG LLESKLDRHQ DISLSMLLKL VKVFGSLIYT SLSTPTSVGV DIEAEKRMER YNLCFIELEK VKSCLPALSR RGGSIAKTAQ
801: ELNLALHEVS
001: MTTKRAYKLQ EFVAHSAAVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLYGHSS GIDSVTFDAS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARRGGL VAKSVLELNL AFQEVSS
101: RSNCISVDFH PFGEFFASGS LDTNLKIWDI RKKGCIHTYK GHTRGVNVLR FTPDGRWVVS GGEDNIVKVW DLTAGKLLTE FKSHEGQIQS LDFHPHEFLL
201: ATGSADRTVK FWDLETFELI GSGGPETAGV RCLSFNPDGK TVLCGLQESL KIFSWEPIRC HDGVDVGWSR LSDMNVHEGK LLGCSYNQSC VGVWVVDLSR
301: TEPCMAGDTA QSNGHPEKRS CSGRDPVVLN DNNSKTVLGK LSVSQNVDPL LKETKSLGRL SVSQNSDPST KETKSIGRSS TSQNSESSMK ESKPLGRLSV
401: SQNSDVSKES RTFSSTGSLP GTPHRVSSTN VSKATSGVST AVSNAATSRR NFTKANPKAN PVNKAADFAP VIVPRADPRI EQATESRAEL DIIARTMPYS
501: LQAADSRRSP SSRNNPDLPD ASVLEMSESQ PVEPNNIPDG GTLPGGKVGM RGATERSIND FRYKRYGRSN SRSRMGSPPR NHDENYDLVS HRSNRDPSPT
601: ESQKGGRFQS LVINRERRGR FSNFEGPVSN FSSGNMPAPN IRPSNMFKQR GNHMPVEQGI DSPSEENIVE DIMGKHNQFV SSMQSRLAKL QVVRRYWERN
701: DVKNSIGSIE KMADNAVTAD VLGIITERNE ILTLDNCTSL LPLLTALLGS GMDQHLSVSL DLLLKLVRLY GSPIYSSLSA PASVGVDIEA EQRIERYSRC
801: FVELEKVKAC LPSLARRGGL VAKSVLELNL AFQEVSS
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/Swiss-Prot;Acc:Q8H0T9]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
SUBAcon: [mitochondrion,plastid,nucleus,cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.