Subcellular Localization
min:
: max
Winner_takes_all: cytosol
Predictor Summary:
Predictor Summary:
- cytosol 2
- mitochondrion 1
- nucleus 1
| Predictors | GFP | MS/MS | Papers | ||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
PPI
No PPI Data
Homology
Paralog
| locus | Identity | Homology Identity |
|---|
Ortholog
| locus | Homology Species | Location | Identity | Homology Identity |
|---|---|---|---|---|
| OQU87670 | Sorghum | cytosol | 92.81 | 93.03 |
| Os01t0780400-02 | Rice | cytosol | 78.9 | 78.52 |
| TraesCS3D01G313800.1 | Wheat | cytosol | 77.82 | 78.38 |
| TraesCS3A01G317500.1 | Wheat | cytosol | 77.34 | 77.62 |
| TraesCS3B01G349000.2 | Wheat | cytosol | 76.86 | 77.14 |
| KRH21524 | Soybean | cytosol | 20.62 | 76.44 |
| HORVU3Hr1G076760.7 | Barley | cytosol, mitochondrion, nucleus | 76.62 | 66.22 |
| CDY54233 | Canola | golgi | 12.71 | 56.99 |
| VIT_00s0776g00020.t01 | Wine grape | cytosol, mitochondrion, nucleus | 31.89 | 51.06 |
| KRH10790 | Soybean | cytosol | 44.0 | 44.48 |
| KRH20528 | Soybean | cytosol | 41.13 | 44.09 |
| GSMUA_Achr1P08830_001 | Banana | cytosol | 50.96 | 43.91 |
| KRH49977 | Soybean | cytosol | 35.13 | 42.77 |
| CDY34658 | Canola | mitochondrion | 38.13 | 41.51 |
| VIT_00s1406g00010.t01 | Wine grape | cytosol, mitochondrion, nucleus | 13.55 | 38.31 |
| Zm00001d026621_P006 | Maize | cytosol | 40.17 | 36.81 |
| Zm00001d001828_P033 | Maize | cytosol | 39.81 | 36.01 |
| CDY34846 | Canola | nucleus | 38.49 | 35.2 |
| Solyc02g078800.2.1 | Tomato | extracellular | 43.29 | 35.08 |
| VIT_00s1397g00010.t01 | Wine grape | cytosol | 13.91 | 34.22 |
| AT1G11160.1 | Thale cress | cytosol | 39.69 | 32.42 |
| KRH21526 | Soybean | cytosol, peroxisome | 23.02 | 32.05 |
| Zm00001d032598_P023 | Maize | cytosol, plasma membrane, plastid | 35.37 | 31.96 |
| Bra031445.1-P | Field mustard | cytosol | 42.81 | 31.82 |
| CDY03812 | Canola | cytosol | 42.69 | 31.7 |
| CDY52222 | Canola | cytosol | 42.57 | 31.64 |
| AT1G61210.1 | Thale cress | cytosol | 44.12 | 31.16 |
| CDY15006 | Canola | cytosol | 37.77 | 31.07 |
| Zm00001d033713_P002 | Maize | cytosol, extracellular, plastid | 18.23 | 30.34 |
| Zm00001d036709_P001 | Maize | cytosol | 8.63 | 22.09 |
| Zm00001d046930_P001 | Maize | cytosol, extracellular, plasma membrane | 8.51 | 21.78 |
| Zm00001d021866_P001 | Maize | plastid | 8.03 | 20.43 |
| PGSC0003DMT400057760 | Potato | cytosol | 19.3 | 20.25 |
| Zm00001d033849_P002 | Maize | extracellular, nucleus | 7.67 | 20.06 |
| Zm00001d021868_P001 | Maize | plastid | 7.79 | 19.82 |
| Zm00001d050708_P002 | Maize | cytosol | 6.35 | 17.49 |
| Zm00001d033309_P003 | Maize | cytosol | 9.47 | 16.36 |
| Zm00001d039211_P006 | Maize | cytosol | 9.59 | 16.1 |
| Zm00001d041945_P003 | Maize | cytosol | 7.91 | 15.53 |
| Zm00001d011779_P005 | Maize | cytosol | 7.79 | 13.27 |
| Zm00001d033994_P002 | Maize | mitochondrion, nucleus | 7.67 | 12.62 |
| Zm00001d042091_P002 | Maize | cytosol, mitochondrion, nucleus, peroxisome, plastid | 10.31 | 11.98 |
Protein Annotations
| MapMan:13.4.4.2.2 | Gene3D:2.130.10.10 | UniProt:A0A1D6GA50 | ProteinID:AQK99965.1 | InterPro:G-protein_beta_WD-40_rep | GO:GO:0003674 |
| GO:GO:0005488 | GO:GO:0005515 | GO:GO:0005575 | GO:GO:0005622 | GO:GO:0005623 | GO:GO:0005737 |
| GO:GO:0005856 | GO:GO:0005874 | GO:GO:0008017 | GO:GO:0008150 | GO:GO:0008352 | GO:GO:0009987 |
| GO:GO:0016043 | GO:GO:0051013 | InterPro:IPR001680 | InterPro:IPR015943 | InterPro:IPR017986 | InterPro:Katanin_C-terminal |
| InterPro:Katanin_bsu1 | HAMAP:MF_03022 | PFAM:PF00400 | PFAM:PF13925 | PRINTS:PR00320 | ScanProsite:PS00678 |
| PFscan:PS50082 | PFscan:PS50294 | PANTHER:PTHR19845 | PANTHER:PTHR19845:SF5 | SMART:SM00320 | SUPFAM:SSF50978 |
| UniParc:UPI000842DFD0 | InterPro:WD40/YVTN_repeat-like_dom_sf | InterPro:WD40_repeat | InterPro:WD40_repeat_CS | InterPro:WD40_repeat_dom | InterPro:WD40_repeat_dom_sf |
| EnsemblPlantsGene:Zm00001d012620 | EnsemblPlants:Zm00001d012620_P025 | EnsemblPlants:Zm00001d012620_T025 | SEG:seg | : | : |
Description
Transducin/WD40 repeat-like superfamily protein
Coordinates
chr8:-:177298859..177308249
Molecular Weight (calculated)
91661.9 Da
IEP (calculated)
8.064
GRAVY (calculated)
-0.311
Length
834 amino acids
Sequence
(BLAST)
(BLAST)
001: MDPEKRGYEL QNFVAHDAEV RSLSIGKKSR RVFITGGNDR KVKLWAIGKQ TPLLTLSGHT SAVEAVQFDS AEVLVLAGSS NGSIKLWDLE EAKVVRSLTG
101: HRSSCTAVEF HPFGEFFASG SSDTDLKIWD IKKKGYIHTY KGHRGAIKTI RFTPDGRWVV TGGEDNIVKV WDLTAGKLLH DFKFHSGQIN CIDFHPQEFL
201: LATGSADRTV KFWDLETFEL IGSSGPEGTG VRSMVFHPDG KTLFCGLDQS LKVFSWEPVR CHDVVDMGWS NLADLSIYEG KLLGCSYHEC RVGLWAADIS
301: LIGPYALGVL PKANFFAELV QSMEDNPVKP VDSTANSRPA SAMAHSRSSY KIKESGIAQS RVRGSHLTPA STDKTKKDRS STIPRRPDSS LKSSVQSTTL
401: MRRMKLVDSP STNTKNVERN VGQRDISLAS RAVMANNSAT AKKSNLTESA LVKDIYTTSQ AVSAPIVVPR DILEDKTVSN VRRGTGETAA VPDDFRIPVH
501: RRKPSLSGSA ADSDSSSRSV FTEPDVCSEG LSSLKFSFGL TPYHKKEEFG DVDNEGIAQI AEKMERTVSL DHSQQLNDDK SFESPCSTTE TAKVKYVRGV
601: AVPLGKTKSL VERWEKRETS STDYSPQTGS CGDRASRNDN HPFHLAEPST TFEKDLSTVD EAMAPVNLVR NHDEFLNAVK LRLTKLEMMR HVFEQSGIKG
701: AIAAVAKLPD NAVQADVVSA LKGKLDLFNL EFFSNFLPVL AGLLCSKTER HAMVSLEMLL DLIKIFGPVI HSALSANLGV GVDIQAEQRL QRCSRCFNHL
801: QKIQQSLNPL ILRGGQTAQL AQELSLSLQD LVVI
101: HRSSCTAVEF HPFGEFFASG SSDTDLKIWD IKKKGYIHTY KGHRGAIKTI RFTPDGRWVV TGGEDNIVKV WDLTAGKLLH DFKFHSGQIN CIDFHPQEFL
201: LATGSADRTV KFWDLETFEL IGSSGPEGTG VRSMVFHPDG KTLFCGLDQS LKVFSWEPVR CHDVVDMGWS NLADLSIYEG KLLGCSYHEC RVGLWAADIS
301: LIGPYALGVL PKANFFAELV QSMEDNPVKP VDSTANSRPA SAMAHSRSSY KIKESGIAQS RVRGSHLTPA STDKTKKDRS STIPRRPDSS LKSSVQSTTL
401: MRRMKLVDSP STNTKNVERN VGQRDISLAS RAVMANNSAT AKKSNLTESA LVKDIYTTSQ AVSAPIVVPR DILEDKTVSN VRRGTGETAA VPDDFRIPVH
501: RRKPSLSGSA ADSDSSSRSV FTEPDVCSEG LSSLKFSFGL TPYHKKEEFG DVDNEGIAQI AEKMERTVSL DHSQQLNDDK SFESPCSTTE TAKVKYVRGV
601: AVPLGKTKSL VERWEKRETS STDYSPQTGS CGDRASRNDN HPFHLAEPST TFEKDLSTVD EAMAPVNLVR NHDEFLNAVK LRLTKLEMMR HVFEQSGIKG
701: AIAAVAKLPD NAVQADVVSA LKGKLDLFNL EFFSNFLPVL AGLLCSKTER HAMVSLEMLL DLIKIFGPVI HSALSANLGV GVDIQAEQRL QRCSRCFNHL
801: QKIQQSLNPL ILRGGQTAQL AQELSLSLQD LVVI
0001: MAKRGYKLQE FLAHSANVNC LSIGKKTSRL FITGGDDYKV NLWAIGKPTS LMSLCGHTSA VDSVAFDSAE VLVLAGASSG VIKLWDVEEA KMVRAFTGHR
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDSTGGNSAV AHKSGSLSTP ATSTGQAGDN KSLVVHSVVP RDSDIGKDSS
0401: DSGKESITFS KTKPGMLLRP AYVRKTPTKF DETKKQSVAV GYLKKSGLDG EKKLDTETAF DSEMSGRNPY DADDSIIKSI TNKFEQALLP ESPTDEAKCM
0501: LLKPPRVQRS PSTKYNEARW ATSTDSGALD SKKNGLESSR DMDLPTGLRD DRGSNPCEED IENKSISSRS ERVLSPEKAG DELKSLESPG GSKESKSVKV
0601: VRGVKVVSGR TRSLVERFER GEKITHSEDK AASATVVHSS NSVEEEPLTA SVQTVSMMPT QVMPVKLDQA TNSTTVDVPV LSTRRTKSTP VRVMPVVLGR
0701: DTSMATDTPP VTSTRPDRTS ATNLTSDVSG VTSKRQTRTS PAPVMPMILN QTTKMKSDEP SITSTWPDRT SATDLTSDVS GVISSRQTRT SPAPVMPMKL
0801: NQKTKIKSDE PPITSTRPDR PSATNLTSDE SPVTSTRQAK TSPAPVTPVI LNQRQTTNMK SDEPPVISTR PLRTSSARVM PVILNQASTT YDERPLSSSR
0901: SARTSPARIM PMKLNQADNM PSYEPPVALT RSARNSPARV IPVKLNQATN VTADASHIRS RQRFSPTQTL ATPAVFDQVT DMTLDETTKT QQSSDILTQK
1001: EEPQISGRED DGDIWEILMR THSEVLNTLQ SRLTKLQIVR HFWERSDIKG AIAALRKLSD HSVQADVINI LTDKTEILTL DLFSQLAPVL TGLLGSKTER
1101: PVNVSLEMLL KLVAVFGTVI QSTVSARRVV GVDLHAEERL QICQSCSAEL QKVQKILPLL TRRGGLIARK AQELNLVLQT P
0101: SNCSAVEFHP FGEFLASGSS DANLKIWDIR KKGCIQTYKG HSRGISTIRF TPDGRWVVSG GLDNVVKVWD LTAGKLLHEF KFHEGPIRSL DFHPLEFLLA
0201: TGSADRTVKF WDLETFELIG STRPEATGVR SIKFHPDGRT LFCGLDDSLK VYSWEPVVCH DGVDMGWSTL GDLCISEGKL LGCSYYQNSV GIWVSDISQI
0301: EPYGIGSADK KECVEKILSA LDDQSFDRIK STPRRSSSPD YETKEIKNIY IDSTGGNSAV AHKSGSLSTP ATSTGQAGDN KSLVVHSVVP RDSDIGKDSS
0401: DSGKESITFS KTKPGMLLRP AYVRKTPTKF DETKKQSVAV GYLKKSGLDG EKKLDTETAF DSEMSGRNPY DADDSIIKSI TNKFEQALLP ESPTDEAKCM
0501: LLKPPRVQRS PSTKYNEARW ATSTDSGALD SKKNGLESSR DMDLPTGLRD DRGSNPCEED IENKSISSRS ERVLSPEKAG DELKSLESPG GSKESKSVKV
0601: VRGVKVVSGR TRSLVERFER GEKITHSEDK AASATVVHSS NSVEEEPLTA SVQTVSMMPT QVMPVKLDQA TNSTTVDVPV LSTRRTKSTP VRVMPVVLGR
0701: DTSMATDTPP VTSTRPDRTS ATNLTSDVSG VTSKRQTRTS PAPVMPMILN QTTKMKSDEP SITSTWPDRT SATDLTSDVS GVISSRQTRT SPAPVMPMKL
0801: NQKTKIKSDE PPITSTRPDR PSATNLTSDE SPVTSTRQAK TSPAPVTPVI LNQRQTTNMK SDEPPVISTR PLRTSSARVM PVILNQASTT YDERPLSSSR
0901: SARTSPARIM PMKLNQADNM PSYEPPVALT RSARNSPARV IPVKLNQATN VTADASHIRS RQRFSPTQTL ATPAVFDQVT DMTLDETTKT QQSSDILTQK
1001: EEPQISGRED DGDIWEILMR THSEVLNTLQ SRLTKLQIVR HFWERSDIKG AIAALRKLSD HSVQADVINI LTDKTEILTL DLFSQLAPVL TGLLGSKTER
1101: PVNVSLEMLL KLVAVFGTVI QSTVSARRVV GVDLHAEERL QICQSCSAEL QKVQKILPLL TRRGGLIARK AQELNLVLQT P
Arabidopsis Description
Katanin p80 WD40 repeat-containing subunit B1 homolog [Source:UniProtKB/TrEMBL;Acc:F4HTH8]
SUBAcon: [cytosol]
SUBAcon: [cytosol]
Hydropathy Plot
About CropPAL
The Protein Annotated Locations Database (CropPAL) houses large scale proteomic and GFP localization data from published experimental studies in Soybean (Glycine max), Maize (Zea mays), Wheat (Triticum aestivum), Barley (Hordeum vulgare), Rice (Oryza sativa), Field mustard (Brassica rapa), Canola (Brassica napus), Sorghum (Sorghum bicolor), Potato (Solanum tuberosum), Tomato (Solanum lycopersicum), Banana (Musa acuminata) and Wine grape (Vitis vinifera) as well as precomputed predictions for protein subcellular localizations using protein sequences.